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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03477 phylogeny
for amino acid alignment


 
cone domain
((((((Q9RU78_DEIRA/52-139:1.34769,(Q9RU78_DEIRA/223-308:0.81314,((((((((O53767_MYCTU/7-95:0.65726,O58101_PYRHO/11-103:0.35764):0.34195,(Q97CL0_THEVO/5-99:0.50679,Q9I4I1_PSEAE/32-132:0.68879):0.16703):0.18365,(Q9I2I4_PSEAE/11-100:0.33162,Q9ZER4_ALCEU/14-106:0.75418):0.26128):0.12710,((Q99ZJ1_STRPY/7-101:0.70449,(((NRDD_HAEIN/4-95:0.14053,Q9CM95_PASMU/4-95:0.12998):0.23634,(NRDD_SALTY/3-92:0.23544,Q9KM77_VIBCH/3-92:0.55772):0.34071):0.43371,((Q97SW2_STRPN/14-108:0.28932,Q99XP7_STRPY/15-109:0.33147):0.13778,Q9ZAX6_LACLC/15-106:0.20722):0.35825):0.03416):0.20324,((RIR1_CHLPN/118-217:0.26804,RIR1_CHLTR/118-219:0.31444):0.22194,(RIR1_CHLPN/9-111:0.13854,RIR1_CHLTR/9-111:0.13458):0.73758):0.15505):0.14891):0.11569,(Q97JR4_CLOAB/3-92:0.97097,Q97LS4_CLOAB/2-94:0.45959):0.28127):0.09019,RIR1_TREPA/1-98:1.01961):0.18856,(((((RIR1_TRYBB/6-96:0.81248,(((((RIR1_CAEEL/7-97:0.17404,RIR1_DROME/12-102:0.15676):0.04141,RIR1_BRARE/1-91:0.11018):0.04477,(RIR1_SCHPO/1-91:0.05131,RIR1_YEAST/1-91:0.21667):0.12631):0.09487,(O41111_CHVP1/14-116:0.50597,(RIR1_CRYPV/1-90:0.12395,RIR1_PLAFG/1-91:0.14024):0.38405):0.06484):0.07426,Q65357_NPVMB/1-91:0.66266):0.12815):0.24227,Q9QAL9_WSSV/8-105:1.27525):0.26806,((((Q9PJ87_CAMJE/1-90:0.14235,RIR1_HELPJ/2-91:0.22588):0.26317,RIR1_AQUAE/3-91:0.27888):0.23280,(RIR1_BPT4/4-92:0.59886,(RIR1_BUCAI/5-94:0.13667,RIR1_SALTY/5-94:0.10226):0.21600):0.21184):0.22072,RIR1_SYNY3/31-119:0.72142):0.21809):0.63182,RIR1_CHLTR/237-327:1.84151):0.43850,(O26580_METTH/1-89:1.19580,((Y1816_NEIMB/49-139:1.03581,(((((YC09_RHILO/49-139:0.12455,Y1209_RHIME/49-139:0.22649):0.09994,Y1358_CAUCR/49-139:0.20624):0.30597,((NRDR_STRCL/46-136:0.20081,Y2737_MYCBO/46-136:0.13795):0.40791,Y087_DEIRA/49-136:0.47008):0.37136):0.13153,((Y4057_PSEAE/49-139:0.21229,(Y943_HAEIN/49-139:0.21620,(YBAD_SHIFL/49-139:0.08945,Y2272_VIBCH/49-139:0.16990):0.07332):0.11568):0.04663,Y948_XYLFA/49-139:0.47848):0.25972):0.02899,(Y1707_THEMA/49-139:0.34742,(((Y1698_CLOAB/49-139:0.38563,(YTCG_BACSU/49-139:0.20871,Y3146_BACHD/49-139:0.16598):0.09933):0.07307,Y1686_STAAM/49-139:0.32082):0.13874,((Y338_STRPY/49-139:0.19072,YHFF_LACLA/47-137:0.36171):0.04840,Y1713_STRPN/49-139:0.13314):0.17692):0.07995):0.12482):0.11736):0.14283,((Y780_SYNY3/49-139:0.29629,YRS1_SYNP6/49-139:0.27737):0.30051,Y406_CHLTR/48-138:0.67995):0.00000):0.66845):0.34378):0.28313):0.00000,Q97ZH9_SULSO/16-102:1.29958):1.15409):0.40584):0.46541,PGK2_PYRAB/3-89:0.62652):0.06893,PGK2_METJA/6-92:0.60945):0.43313,(PGK2_METTH/5-90:0.38803,PGK2_METFE/5-90:0.18021):0.31388):1.55731,O27582_METTH/98-184:0.33863):0.00139,Q9HH74_METMP/92-178:0.18370,Y832_METJA/90-176:0.09131);