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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03462 phylogeny
for nucleotide alignment


 
((((((((RF1_LACLA/63-178,RF1_STRPN/65-180),((((((((RF1_MYCPN/66-180,RF1_MYCGE/66-180),RF1_UREPA/66-180),RF1_MYCCA/66-181),RF1_MYCPU/69-181),(((RF1_HELPY/62-177,RF1_CAMJE/60-175),RF1_BUCAI/63-178),RF1_BORBU/63-178)),(((O80723_ARATH/98-213,RF1_RICPR/66-177),(Q9UGC7_HUMAN/82-196,(RF1M_HUMAN/138-254,Q98TM5_PLAFE/12-129))),RF1_AQUAE/68-181)),RF1_STAAW/63-177),(Q9LYD0_ARATH/120-231,RF1_CLOAB/63-177))),(RF1_BACSU/63-177,RF1_BACHD/63-177)),((RF1_TREPA/64-177,RF1_SYNY3/68-183),(RF1_THEMA/50-155,(((RF1_RHILO/64-179,RF1_PSEAE/67-180),((RF1_THETH/59-174,Q9VK20_DROME/84-198),(RF1_DEIRA/66-181,((RF1_STRCO/60-181,RF1_MYCTU/63-179),(((RF2_BACSU/84-194,(((Q9M2M8_ARATH/127-243,Q9C5B2_ARATH/161-273),Q97F95_CLOAB/45-155),(Q9A0S5_STRPY/56-164,RF2_LACLA/84-194))),Q9ANV0_9LACO/84-194),((RF2_CAUCR/80-190,Q98NB3_RHILO/47-157),((RF2_TREPA/79-188,(RF2_MYCTU/87-196,RF2_STRCO/84-194)),(((RF2_ECOLI/85-195,(RF2_RICPR/83-193,Q9PEB7_XYLFA/49-159)),RF2_NEIMB/87-197),(RF2_AQUAE/81-193,(RF2_THEMA/86-194,RF2_HELPJ/84-194)))))))))),(RF1_XYLFA/63-178,RF1_NEIMB/65-178))))),(RF1_COXBU/67-180,(RF1_VIBCH/67-180,(RF1_ECOLI/63-178,RF1_PASMU/63-178)))),(RF1_CHLPN/62-177,RF1_CHLTR/62-177)),RF1M_SCHPO/96-212),RF1M_YEAST/107-223,RF1M_KLULA/90-206);
((((((((RF1_LACLA/63-178:0.20011,RF1_STRPN/65-180:0.20375):0.12822,((((((((RF1_MYCPN/66-180:0.25893,RF1_MYCGE/66-180:0.14877):0.29178,RF1_UREPA/66-180:0.22479):0.08901,RF1_MYCCA/66-181:0.18367):0.08737,RF1_MYCPU/69-181:0.34501):0.08248,(((RF1_HELPY/62-177:0.29728,RF1_CAMJE/60-175:0.19889):0.11692,RF1_BUCAI/63-178:0.32365):0.07271,RF1_BORBU/63-178:0.24799):0.05510):0.04569,(((O80723_ARATH/98-213:0.41807,RF1_RICPR/66-177:0.29361):0.06588,(Q9UGC7_HUMAN/82-196:0.28410,(RF1M_HUMAN/138-254:0.16695,Q98TM5_PLAFE/12-129:0.49752):0.28061):0.20794):0.06261,RF1_AQUAE/68-181:0.38665):0.07375):0.04971,RF1_STAAW/63-177:0.25069):0.04959,(Q9LYD0_ARATH/120-231:0.48945,RF1_CLOAB/63-177:0.22108):0.07367):0.03200):0.10928,(RF1_BACSU/63-177:0.22543,RF1_BACHD/63-177:0.20059):0.08072):0.08948,((RF1_TREPA/64-177:0.45830,RF1_SYNY3/68-183:0.28980):0.06958,(RF1_THEMA/50-155:0.41516,(((RF1_RHILO/64-179:0.23400,RF1_PSEAE/67-180:0.18855):0.07267,((RF1_THETH/59-174:0.33477,Q9VK20_DROME/84-198:0.56053):0.09467,(RF1_DEIRA/66-181:0.38997,((RF1_STRCO/60-181:0.11778,RF1_MYCTU/63-179:0.41300):0.13578,(((RF2_BACSU/84-194:0.21493,(((Q9M2M8_ARATH/127-243:0.58738,Q9C5B2_ARATH/161-273:0.16202):0.25799,Q97F95_CLOAB/45-155:0.33201):0.12654,(Q9A0S5_STRPY/56-164:0.22307,RF2_LACLA/84-194:0.24297):0.11410):0.09653):0.18590,Q9ANV0_9LACO/84-194:0.32113):0.13979,((RF2_CAUCR/80-190:0.24469,Q98NB3_RHILO/47-157:0.15692):0.07815,((RF2_TREPA/79-188:0.57010,(RF2_MYCTU/87-196:0.20991,RF2_STRCO/84-194:0.13712):0.11575):0.10260,(((RF2_ECOLI/85-195:0.26310,(RF2_RICPR/83-193:0.48603,Q9PEB7_XYLFA/49-159:0.19927):0.10915):0.06189,RF2_NEIMB/87-197:0.30387):0.05577,(RF2_AQUAE/81-193:0.34822,(RF2_THEMA/86-194:0.22084,RF2_HELPJ/84-194:0.37972):0.11370):0.14868):0.08449):0.03710):0.02548):0.24161):0.01935):0.04106):0.04398):0.09552,(RF1_XYLFA/63-178:0.26879,RF1_NEIMB/65-178:0.16337):0.08538):0.10092):0.05665):0.08458):0.01531,(RF1_COXBU/67-180:0.24805,(RF1_VIBCH/67-180:0.19234,(RF1_ECOLI/63-178:0.18946,RF1_PASMU/63-178:0.20782):0.07452):0.06015):0.09420):0.10710,(RF1_CHLPN/62-177:0.16078,RF1_CHLTR/62-177:0.22846):0.29274):0.24829,RF1M_SCHPO/96-212:0.36989):0.22180,RF1M_YEAST/107-223:0.21545,RF1M_KLULA/90-206:0.26389);