EMBL-EBI
>
Goldman Group
PANDIT Home
|
Browse PANDIT
|
Help on PANDIT
|
Release notes
|
Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF03462 - PCRF)
PCRF domain
(
Pfam
reference: accession no.
PF03462
)
(
Interpro
reference: accession no.
IPR005139
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
69 sequences @ 136 aa
(ave. pairwise identity: 0.37)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 32.99)
nucleotides
(available for above)
62 sequences @ 408 bp
(ave. pairwise identity: 0.46)
New Hampshire format
(total tree length: 23.86)
amino acids, restricted set
(corresp. to available nt seqs)
62 sequences @ 136 aa
(ave. pairwise identity: 0.37)
New Hampshire format
(total tree length: 30.63)