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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03459 phylogeny
for restricted amino acid alignment


 
((((((Q9YB65_AERPE/293-351,((((Q98D09_RHILO/293-351,(Q48394_KLEOX/302-362,Q9PEG1_XYLFA/294-352)),(Q9HZ51_PSEAE/296-354,Q988P3_RHILO/304-356)),(((Q98G42_RHILO/287-345,Y4FO_RHISN/275-333),(O53482_MYCTU/293-347,P96483_STRRE/304-366)),((Q9I1D7_PSEAE/295-354,O30494_PSEFL/292-351),((Q98DB3_RHILO/264-323,Q9R9Q4_RHIME/266-325),(Q98D04_RHILO/265-324,(SMOK_RHOSH/265-324,O68113_RHOCA/265-323)))))),(((((AGLK_RHIME/292-352,((Q98FW7_RHILO/287-346,Q98LW3_RHILO/288-345),Q9RSH1_DEIRA/330-388)),(Q98EP4_RHILO/291-346,(Q982U5_RHILO/289-342,(Y4OS_RHISN/304-360,Q987L3_RHILO/326-383)))),(((Q9X103_THEMA/301-359,(((Q9KDS1_BACHD/297-355,Q99X09_STAAM/297-355),(Q97PM5_STRPN/313-366,(Q9CIE2_LACLA/314-367,Q99XX6_STRPY/309-367))),Q9HHQ5_HALN1/296-354)),(Q9KWT9_9SPHN/295-353,(Q9V2Q1_PYRAB/302-354,O32151_BACSU/304-357))),((Q97YY4_SULSO/290-349,(((Q9V293_PYRAB/303-361,O57933_PYRHO/307-365),Q9YGA6_THELI/304-362),(Q98GD4_RHILO/201-259,O28665_ARCFU/284-342))),(Q98GC8_RHILO/300-360,((Q98IN2_RHILO/295-353,P73468_SYNY3/335-396),Q98GD2_RHILO/293-352))))),(Q987D5_RHILO/290-348,(Q9YG58_AERPE/311-371,Q9WYQ2_THEMA/290-349))),(MALK_ECOLI/294-354,(Q9X0V9_THEMA/293-345,Q9YBG2_AERPE/282-341))))),(Q97P19_STRPN/274-335,Q98JZ1_RHILO/300-362)),((((Q9I631_PSEAE/184-248,MODE_ECOLI/197-258),Q9ABA4_CAUCR/213-275),((((O86831_STRCO/247-302,(Q9RUT0_DEIRA/236-288,Q9YB65_AERPE/234-289)),(O54119_STRCO/240-292,Q9HY19_PSEAE/236-289)),(Q9KWT9_9SPHN/237-290,(((Q987D5_RHILO/236-288,Q9PEG1_XYLFA/237-291),Q9RSH1_DEIRA/272-323),((Q9HZ51_PSEAE/238-293,UGPC_ECOLI/237-287),(((MALK_VIBCH/236-290,MALK_ECOLI/236-292),(Q989G1_RHILO/236-292,((AGLK_RHIME/237-290,Q98CK7_RHILO/237-290),Q9AI63_9ENTR/237-291))),(Q9AN99_BRAJA/236-290,((Q9I1D7_PSEAE/236-290,O30494_PSEFL/236-290),(Q98D09_RHILO/238-290,Q987L3_RHILO/274-325)))))))),((((O26577_METTH/284-346,(O27003_METTH/287-349,(O57896_PYRHO/281-343,Q9V2C0_PYRAB/281-343))),(O27513_METTH/7-70,(Q9X8Y8_STRCO/310-371,(MODC_MYCTU/294-359,O31231_ARTNI/288-346)))),((((MODC_HAEIN/290-351,MODC_PASMU/290-351),MODC_VIBCH/293-359),MODC_ECOLI/290-352),(((MODC1_BRAJA/298-364,MODC_RHOCA/290-357),MODC_RHILO/294-357),(MODC_PSEAE/297-361,MODC2_AZOVI/294-358)))),(((MODE_ECOLI/125-189,(MODE_HAEIN/125-189,Q9CMR6_PASMU/126-190)),Q9I631_PSEAE/115-178),(((MOPA_RHOCA/127-190,MOPB_RHOCA/132-195),Q9ABA4_CAUCR/147-210),(((MODE_AZOVI/132-195,Q44529_AZOVI/3-66),(((Q9AK85_STRCO/3-66,Q9AK85_STRCO/74-136),Q9X8Y5_STRCO/66-128),((Q9HYG5_PSEAE/6-68,MODE_HERSE/129-192),Q9PIJ7_CAMJE/66-128))),((MODE_AZOVI/203-266,(MOPA_RHOCA/199-262,MOPB_RHOCA/204-267)),(P70768_9NOST/3-66,(Q44529_AZOVI/75-138,((MOP1_CLOPA/3-66,MOP_HAEIN/3-66),(Q98KI0_RHILO/3-66,MODE_HERSE/201-264))))))))))),(O86751_STRCO/281-340,(MODE_HAEIN/196-251,Q9CMR6_PASMU/195-259)))),(((Q986V9_RHILO/299-364,Q988Z0_RHILO/313-377),((Q982L2_RHILO/296-356,(Q98JA8_RHILO/170-230,(((Q98JX3_RHILO/290-350,(Q9HY73_PSEAE/285-344,Q9HY19_PSEAE/296-360)),O86831_STRCO/312-374),(Q985H3_RHILO/296-358,Q98BX9_RHILO/268-327)))),(Q98HB1_RHILO/299-359,Q9I6T2_PSEAE/306-367))),(Q9RUT0_DEIRA/293-356,Q9I6G5_PSEAE/283-346))),(CYSA_MYCTU/270-334,CYSA_SYNP7/276-339)),O50559_AGRSP/256-319,Q9R702_9RHIZ/291-354);
((((((Q9YB65_AERPE/293-351:0.93755,((((Q98D09_RHILO/293-351:0.89391,(Q48394_KLEOX/302-362:1.11593,Q9PEG1_XYLFA/294-352:0.99295):0.03116):0.06927,(Q9HZ51_PSEAE/296-354:0.87051,Q988P3_RHILO/304-356:0.38367):0.39494):0.08757,(((Q98G42_RHILO/287-345:0.70208,Y4FO_RHISN/275-333:0.83417):0.26137,(O53482_MYCTU/293-347:0.60253,P96483_STRRE/304-366:0.68128):0.22188):0.45331,((Q9I1D7_PSEAE/295-354:0.39949,O30494_PSEFL/292-351:0.28201):0.47460,((Q98DB3_RHILO/264-323:0.38574,Q9R9Q4_RHIME/266-325:0.77974):0.43555,(Q98D04_RHILO/265-324:0.16252,(SMOK_RHOSH/265-324:0.33346,O68113_RHOCA/265-323:0.38856):0.14128):0.18018):0.30709):0.17798):0.23328):0.15750,(((((AGLK_RHIME/292-352:0.88136,((Q98FW7_RHILO/287-346:0.75899,Q98LW3_RHILO/288-345:0.47417):0.12084,Q9RSH1_DEIRA/330-388:0.67392):0.08511):0.26585,(Q98EP4_RHILO/291-346:0.68774,(Q982U5_RHILO/289-342:0.53146,(Y4OS_RHISN/304-360:0.26803,Q987L3_RHILO/326-383:0.59692):0.15607):0.33447):0.21205):0.11773,(((Q9X103_THEMA/301-359:0.48002,(((Q9KDS1_BACHD/297-355:0.38590,Q99X09_STAAM/297-355:0.49106):0.07400,(Q97PM5_STRPN/313-366:0.35222,(Q9CIE2_LACLA/314-367:0.20576,Q99XX6_STRPY/309-367:0.31205):0.31303):0.20237):0.25236,Q9HHQ5_HALN1/296-354:0.76682):0.14082):0.06052,(Q9KWT9_9SPHN/295-353:0.62862,(Q9V2Q1_PYRAB/302-354:0.56253,O32151_BACSU/304-357:0.75287):0.19925):0.17194):0.09618,((Q97YY4_SULSO/290-349:0.87512,(((Q9V293_PYRAB/303-361:0.32281,O57933_PYRHO/307-365:0.11792):0.07567,Q9YGA6_THELI/304-362:0.29882):0.43152,(Q98GD4_RHILO/201-259:0.78206,O28665_ARCFU/284-342:0.87858):0.19201):0.10998):0.12031,(Q98GC8_RHILO/300-360:1.04780,((Q98IN2_RHILO/295-353:0.84488,P73468_SYNY3/335-396:0.61436):0.25782,Q98GD2_RHILO/293-352:0.85246):0.25567):0.05909):0.09533):0.01125):0.10471,(Q987D5_RHILO/290-348:0.77728,(Q9YG58_AERPE/311-371:0.56458,Q9WYQ2_THEMA/290-349:0.61288):0.20544):0.11053):0.10405,(MALK_ECOLI/294-354:1.10019,(Q9X0V9_THEMA/293-345:0.39569,Q9YBG2_AERPE/282-341:0.76201):0.03459):0.34311):0.04431):0.15179):0.12616,(Q97P19_STRPN/274-335:1.53447,Q98JZ1_RHILO/300-362:0.97909):0.36157):0.20991,((((Q9I631_PSEAE/184-248:0.64374,MODE_ECOLI/197-258:0.64756):0.19606,Q9ABA4_CAUCR/213-275:0.97879):0.18773,((((O86831_STRCO/247-302:0.93215,(Q9RUT0_DEIRA/236-288:0.54933,Q9YB65_AERPE/234-289:0.81262):0.31488):0.00000,(O54119_STRCO/240-292:0.64051,Q9HY19_PSEAE/236-289:0.62000):0.23914):0.32433,(Q9KWT9_9SPHN/237-290:0.51042,(((Q987D5_RHILO/236-288:0.55865,Q9PEG1_XYLFA/237-291:0.74010):0.09680,Q9RSH1_DEIRA/272-323:0.62578):0.21380,((Q9HZ51_PSEAE/238-293:0.95295,UGPC_ECOLI/237-287:0.38836):0.11709,(((MALK_VIBCH/236-290:0.51727,MALK_ECOLI/236-292:0.38697):0.45741,(Q989G1_RHILO/236-292:0.66044,((AGLK_RHIME/237-290:0.32595,Q98CK7_RHILO/237-290:0.55255):0.34840,Q9AI63_9ENTR/237-291:0.51482):0.15050):0.22867):0.08222,(Q9AN99_BRAJA/236-290:0.64763,((Q9I1D7_PSEAE/236-290:0.47946,O30494_PSEFL/236-290:0.26157):0.17252,(Q98D09_RHILO/238-290:1.03227,Q987L3_RHILO/274-325:0.44030):0.48195):0.21644):0.24107):0.21549):0.07989):0.18621):0.16776):0.25700,((((O26577_METTH/284-346:0.83182,(O27003_METTH/287-349:0.82960,(O57896_PYRHO/281-343:0.07953,Q9V2C0_PYRAB/281-343:0.27185):0.17225):0.10901):0.22767,(O27513_METTH/7-70:0.56827,(Q9X8Y8_STRCO/310-371:0.49095,(MODC_MYCTU/294-359:1.06266,O31231_ARTNI/288-346:0.13711):0.34084):0.27513):0.19904):0.21082,((((MODC_HAEIN/290-351:0.32781,MODC_PASMU/290-351:0.32346):0.17214,MODC_VIBCH/293-359:0.50772):0.25660,MODC_ECOLI/290-352:0.34609):0.21943,(((MODC1_BRAJA/298-364:0.79781,MODC_RHOCA/290-357:0.55790):0.15090,MODC_RHILO/294-357:0.92807):0.06090,(MODC_PSEAE/297-361:0.36627,MODC2_AZOVI/294-358:0.36118):0.14341):0.08692):0.28240):0.13578,(((MODE_ECOLI/125-189:0.41524,(MODE_HAEIN/125-189:0.47814,Q9CMR6_PASMU/126-190:0.12144):0.39816):0.39336,Q9I631_PSEAE/115-178:0.61450):0.19479,(((MOPA_RHOCA/127-190:0.27350,MOPB_RHOCA/132-195:0.38865):0.10309,Q9ABA4_CAUCR/147-210:0.41037):0.09404,(((MODE_AZOVI/132-195:0.39892,Q44529_AZOVI/3-66:0.34880):0.05248,(((Q9AK85_STRCO/3-66:0.10510,Q9AK85_STRCO/74-136:0.24607):0.31385,Q9X8Y5_STRCO/66-128:0.57120):0.10801,((Q9HYG5_PSEAE/6-68:0.40584,MODE_HERSE/129-192:0.61165):0.13182,Q9PIJ7_CAMJE/66-128:1.05765):0.00000):0.12157):0.12218,((MODE_AZOVI/203-266:0.43834,(MOPA_RHOCA/199-262:0.30123,MOPB_RHOCA/204-267:0.30762):0.09981):0.20573,(P70768_9NOST/3-66:0.45275,(Q44529_AZOVI/75-138:0.35939,((MOP1_CLOPA/3-66:0.31266,MOP_HAEIN/3-66:0.30689):0.14590,(Q98KI0_RHILO/3-66:0.31026,MODE_HERSE/201-264:0.56156):0.16862):0.04020):0.09854):0.09149):0.08999):0.07970):0.11167):0.20992):0.32305):0.23868):0.15030,(O86751_STRCO/281-340:1.41846,(MODE_HAEIN/196-251:0.70835,Q9CMR6_PASMU/195-259:0.41393):0.99371):0.09825):0.08406):0.08596,(((Q986V9_RHILO/299-364:1.05002,Q988Z0_RHILO/313-377:0.82444):0.21641,((Q982L2_RHILO/296-356:1.46951,(Q98JA8_RHILO/170-230:0.56401,(((Q98JX3_RHILO/290-350:0.80004,(Q9HY73_PSEAE/285-344:0.84844,Q9HY19_PSEAE/296-360:1.04459):0.18622):0.37723,O86831_STRCO/312-374:0.82560):0.16166,(Q985H3_RHILO/296-358:0.68815,Q98BX9_RHILO/268-327:0.66393):0.40635):0.13006):0.09657):0.21684,(Q98HB1_RHILO/299-359:0.72314,Q9I6T2_PSEAE/306-367:0.85141):0.30132):0.14114):0.09254,(Q9RUT0_DEIRA/293-356:1.40785,Q9I6G5_PSEAE/283-346:0.86977):0.36758):0.16177):0.47609,(CYSA_MYCTU/270-334:1.21979,CYSA_SYNP7/276-339:0.79427):0.36077):1.01651,O50559_AGRSP/256-319:0.00000,Q9R702_9RHIZ/291-354:0.32380);