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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03171 phylogeny
for nucleotide alignment


 
((((((((((((((((((((((((Q9SB32_ARATH/204-304,Q9SHG1_ARATH/194-294),Q9SYM7_ARATH/207-307),Q40839_PICGL/148-248),(O48631_PRUAR/201-301,Q9XIA5_ARATH/201-301)),(((Q9XIW9_ORYSA/202-301,O23478_ARATH/101-200),Q9SP53_DAUCA/192-293),Q9ZSA7_ARATH/195-294)),((((LDOX_PERFR/214-313,LDOX_MAIZE/230-329),((FLS_CITUN/197-296,FLS_SOLTU/214-310),FLS_MATIN/151-250)),(((O22391_STELP/150-250,(Q39316_BRANA/156-256,O82127_CUCSA/152-253)),(O82126_CUCSA/153-255,O65158_PHAVU/153-253)),(O81606_SORBI/159-259,(Q9ZUN4_ARATH/158-259,Q43419_CUCME/151-252)))),(Q9SRM3_ARATH/249-349,O80449_ARATH/202-302))),(Q9ZQA5_ARATH/241-340,(Q40063_HORVU/185-284,Q40061_HORVU/184-283))),((((((DV4H_CATRO/242-343,Q9XH70_PRUAR/219-318),(ACCO3_LYCES/212-311,O24018_LYCES/213-312)),(((Q9SKK4_ARATH/207-307,O80850_ARATH/207-307),O80851_ARATH/209-311),((P93824_ARATH/208-308,P93821_ARATH/194-293),Q43383_ARATH/210-310))),(Q9SVS8_ARATH/202-305,(O24417_CUCMA/198-299,(((Q9ZWR7_LYCES/205-308,O24623_PEA/207-307),Q9ZWQ0_LACSA/198-298),Q9ZT84_ARATH/201-301)))),((((G2OX1_ARATH/166-273,(O04162_9ROSI/165-271,G2OX_PHACN/176-280)),(G2OX3_ARATH/176-278,G2OX2_ARATH/180-283)),G2OX1_PEA/172-276),G2OX2_PEA/171-285)),(((Q9XHR0_CITLA/215-314,Q39541_CUCMA/219-318),((Q9ZWQ1_LACSA/214-313,Q41366_SPIOL/216-315),(Q39111_ARATH/221-320,(O04706_WHEAT/200-299,Q39112_ARATH/222-321)))),Q40994_PEA/223-322))),(Q43640_SOLME/193-291,Q9XJ43_ATRBE/193-292)),(O49561_ARATH/146-245,((Q9ZTA1_ARATH/261-356,Q9ZTA2_ARATH/248-345),Q9ZTA3_ARATH/165-271))),((O82017_MALDO/154-255,Q9XI75_ARATH/152-254),Q9SD54_ARATH/205-302)),O23763_CUCMA/160-257),(((O60075_SCHPO/159-267,EFE_PSESJ/166-286),(O65485_ARATH/166-270,O24838_ACIAD/193-299)),(ISP7_SCHPO/255-353,(O23518_ARATH/106-212,(Q9SN92_ARATH/149-250,Q9SNC8_ARATH/182-286))))),(((IPNS_NOCLA/178-284,(IPNS_STRGR/180-286,IPNS_STRLP/185-290)),(IPNS_LYSLA/177-283,IPNS_PENCH/180-288)),(((Q48740_LYSLA/156-268,Q48741_LYSLA/156-268),(CEFE_NOCLA/157-269,CEFF_NOCLA/155-267)),CEFE_STRCL/155-267))),((Q9VTH0_DROME/630-721,((PLOD2_MOUSE/646-737,PLOD_CAEEL/639-730),PLOD1_HUMAN/636-727)),PLOD3_HUMAN/647-738)),(Y3529_BORPE/78-178,PIUC_PSEAE/78-178)),(((((Q09973_CAEEL/137-240,(Q11120_SCHPO/124-230,YEN9_YEAST/141-247)),(Y191_SYNY3/189-300,P74376_SYNY3/238-349)),(Q84406_CHVP1/134-240,(((O81759_ARATH/113-221,Q9SZS9_ARATH/194-287),(Q9SQT3_ARATH/121-225,Q9ZW86_ARATH/162-279)),((Q9VVQ6_DROME/391-499,(((P4HA2_CAEEL/401-509,(P4HA1_MOUSE/411-519,P4HA1_CAEEL/404-512)),Q9VA60_DROME/376-465),(Q9VA64_DROME/407-512,Q9VA65_DROME/403-510))),((Q9XUP0_CAEEL/168-278,(Q17985_CAEEL/167-277,Q9XWX4_CAEEL/398-508)),Q9XWX4_CAEEL/148-255))))),((EGLN3_RAT/232-330,Q9VN98_DROME/150-248),O45918_CAEEL/468-566)),(Q13512_HUMAN/369-490,Q9R1J8_RAT/549-670))),Q9VL81_DROME/151-278),(O23127_ARATH/995-1094,(((Q67704_9VIRU/645-738,((Q96806_9VIRU/647-736,(O71188_9CLOS/1601-1694,((Q64962_9VIRU/762-853,(O91901_9VIRU/781-877,O91632_9VIRU/762-870)),RRPO_ACLSA/748-836))),(RRPO_SHVX/653-743,(Q65652_9VIRU/750-841,RRPO_PMV/599-690)))),Q67654_9VIRU/681-772),Q9SIE0_ARATH/194-314))),Q9VKU5_DROME/73-179),((ALKB_ARATH/225-320,ALKB_SCHPO/182-272),(ALKB_CAUCR/117-218,ALKB_ECOLI/113-213))),((Q9U3P9_CAEEL/217-322,Q9W232_DROME/220-325),Q9UT12_SCHPO/114-212)),Q9SL49_ARATH/317-414),Q9ZU81_ARATH/255-351,Q9ZT92_ARATH/343-439);
((((((((((((((((((((((((Q9SB32_ARATH/204-304:0.09740,Q9SHG1_ARATH/194-294:0.13349):0.06850,Q9SYM7_ARATH/207-307:0.13184):0.13859,Q40839_PICGL/148-248:0.30181):0.10711,(O48631_PRUAR/201-301:0.18407,Q9XIA5_ARATH/201-301:0.17923):0.19848):0.06335,(((Q9XIW9_ORYSA/202-301:0.19364,O23478_ARATH/101-200:0.18885):0.15016,Q9SP53_DAUCA/192-293:0.35643):0.07941,Q9ZSA7_ARATH/195-294:0.29522):0.05063):0.04653,((((LDOX_PERFR/214-313:0.11750,LDOX_MAIZE/230-329:0.30345):0.16060,((FLS_CITUN/197-296:0.08328,FLS_SOLTU/214-310:0.26118):0.08877,FLS_MATIN/151-250:0.29395):0.11807):0.14815,(((O22391_STELP/150-250:0.34208,(Q39316_BRANA/156-256:0.17304,O82127_CUCSA/152-253:0.25098):0.11170):0.01225,(O82126_CUCSA/153-255:0.14114,O65158_PHAVU/153-253:0.19681):0.04926):0.07330,(O81606_SORBI/159-259:0.26288,(Q9ZUN4_ARATH/158-259:0.23223,Q43419_CUCME/151-252:0.13971):0.12704):0.04211):0.16807):0.08138,(Q9SRM3_ARATH/249-349:0.12047,O80449_ARATH/202-302:0.21620):0.16876):0.08152):0.04725,(Q9ZQA5_ARATH/241-340:0.26661,(Q40063_HORVU/185-284:0.14177,Q40061_HORVU/184-283:0.28378):0.32719):0.06760):0.12318,((((((DV4H_CATRO/242-343:0.30744,Q9XH70_PRUAR/219-318:0.15830):0.06028,(ACCO3_LYCES/212-311:0.14665,O24018_LYCES/213-312:0.05833):0.16249):0.07212,(((Q9SKK4_ARATH/207-307:0.18116,O80850_ARATH/207-307:0.09366):0.05479,O80851_ARATH/209-311:0.20021):0.11096,((P93824_ARATH/208-308:0.11796,P93821_ARATH/194-293:0.08114):0.08157,Q43383_ARATH/210-310:0.19801):0.05809):0.05537):0.20214,(Q9SVS8_ARATH/202-305:0.39578,(O24417_CUCMA/198-299:0.36129,(((Q9ZWR7_LYCES/205-308:0.36502,O24623_PEA/207-307:0.27239):0.06592,Q9ZWQ0_LACSA/198-298:0.10296):0.09164,Q9ZT84_ARATH/201-301:0.20402):0.12973):0.04826):0.18532):0.02229,((((G2OX1_ARATH/166-273:0.19219,(O04162_9ROSI/165-271:0.13078,G2OX_PHACN/176-280:0.17535):0.03749):0.12860,(G2OX3_ARATH/176-278:0.21561,G2OX2_ARATH/180-283:0.09690):0.16614):0.05840,G2OX1_PEA/172-276:0.17238):0.04505,G2OX2_PEA/171-285:0.25974):0.31581):0.06591,(((Q9XHR0_CITLA/215-314:0.06021,Q39541_CUCMA/219-318:0.15656):0.09529,((Q9ZWQ1_LACSA/214-313:0.15579,Q41366_SPIOL/216-315:0.21987):0.05273,(Q39111_ARATH/221-320:0.14856,(O04706_WHEAT/200-299:0.28673,Q39112_ARATH/222-321:0.11643):0.08617):0.05403):0.03312):0.04693,Q40994_PEA/223-322:0.18197):0.22440):0.05021):0.00963,(Q43640_SOLME/193-291:0.21062,Q9XJ43_ATRBE/193-292:0.29179):0.16634):0.08193,(O49561_ARATH/146-245:0.28953,((Q9ZTA1_ARATH/261-356:0.14163,Q9ZTA2_ARATH/248-345:0.11866):0.18529,Q9ZTA3_ARATH/165-271:0.13647):0.46454):0.08283):0.10962,((O82017_MALDO/154-255:0.19377,Q9XI75_ARATH/152-254:0.17898):0.40984,Q9SD54_ARATH/205-302:0.42928):0.05725):0.10046,O23763_CUCMA/160-257:0.41610):0.10227,(((O60075_SCHPO/159-267:0.49865,EFE_PSESJ/166-286:0.65384):0.12812,(O65485_ARATH/166-270:0.49244,O24838_ACIAD/193-299:0.56259):0.16022):0.13669,(ISP7_SCHPO/255-353:0.51949,(O23518_ARATH/106-212:0.43882,(Q9SN92_ARATH/149-250:0.13120,Q9SNC8_ARATH/182-286:0.15522):0.20636):0.14745):0.11059):0.07823):0.34886,(((IPNS_NOCLA/178-284:0.11950,(IPNS_STRGR/180-286:0.02015,IPNS_STRLP/185-290:0.22269):0.09012):0.02530,(IPNS_LYSLA/177-283:0.12309,IPNS_PENCH/180-288:0.27039):0.06495):0.35935,(((Q48740_LYSLA/156-268:0.10914,Q48741_LYSLA/156-268:0.11418):0.05821,(CEFE_NOCLA/157-269:0.07627,CEFF_NOCLA/155-267:0.21852):0.04005):0.05431,CEFE_STRCL/155-267:0.09019):0.32301):0.10919):0.15759,((Q9VTH0_DROME/630-721:0.23630,((PLOD2_MOUSE/646-737:0.38654,PLOD_CAEEL/639-730:0.41952):0.17460,PLOD1_HUMAN/636-727:0.13506):0.07526):0.08353,PLOD3_HUMAN/647-738:0.02058):0.48440):0.28658,(Y3529_BORPE/78-178:0.24497,PIUC_PSEAE/78-178:0.17436):0.27447):0.19894,(((((Q09973_CAEEL/137-240:0.44997,(Q11120_SCHPO/124-230:0.30919,YEN9_YEAST/141-247:0.28342):0.23332):0.26788,(Y191_SYNY3/189-300:0.29360,P74376_SYNY3/238-349:0.23721):0.23372):0.20688,(Q84406_CHVP1/134-240:0.44133,(((O81759_ARATH/113-221:0.44746,Q9SZS9_ARATH/194-287:0.42096):0.17306,(Q9SQT3_ARATH/121-225:0.20455,Q9ZW86_ARATH/162-279:0.41129):0.07874):0.08336,((Q9VVQ6_DROME/391-499:0.52997,(((P4HA2_CAEEL/401-509:0.12625,(P4HA1_MOUSE/411-519:0.27617,P4HA1_CAEEL/404-512:0.15352):0.10439):0.15304,Q9VA60_DROME/376-465:0.48528):0.08923,(Q9VA64_DROME/407-512:0.20803,Q9VA65_DROME/403-510:0.19926):0.13991):0.02315):0.08089,((Q9XUP0_CAEEL/168-278:0.24635,(Q17985_CAEEL/167-277:0.34512,Q9XWX4_CAEEL/398-508:0.20721):0.08589):0.13295,Q9XWX4_CAEEL/148-255:0.38486):0.15143):0.09303):0.14531):0.33079):0.23173,((EGLN3_RAT/232-330:0.24655,Q9VN98_DROME/150-248:0.17277):0.09520,O45918_CAEEL/468-566:0.39749):0.34063):0.15468,(Q13512_HUMAN/369-490:0.26391,Q9R1J8_RAT/549-670:0.15519):0.42169):0.09211):0.25719,Q9VL81_DROME/151-278:0.85266):0.11405,(O23127_ARATH/995-1094:0.78935,(((Q67704_9VIRU/645-738:0.48280,((Q96806_9VIRU/647-736:0.40264,(O71188_9CLOS/1601-1694:0.37240,((Q64962_9VIRU/762-853:0.37239,(O91901_9VIRU/781-877:0.50796,O91632_9VIRU/762-870:0.46238):0.10188):0.16755,RRPO_ACLSA/748-836:0.39909):0.05611):0.06343):0.09215,(RRPO_SHVX/653-743:0.36181,(Q65652_9VIRU/750-841:0.48603,RRPO_PMV/599-690:0.44863):0.09863):0.08147):0.03824):0.12489,Q67654_9VIRU/681-772:0.34461):0.15245,Q9SIE0_ARATH/194-314:0.49788):0.11344):0.11392):0.11372,Q9VKU5_DROME/73-179:0.61277):0.08150,((ALKB_ARATH/225-320:0.48454,ALKB_SCHPO/182-272:0.50162):0.31263,(ALKB_CAUCR/117-218:0.55245,ALKB_ECOLI/113-213:0.17694):0.21361):0.21645):0.18183,((Q9U3P9_CAEEL/217-322:0.39950,Q9W232_DROME/220-325:0.26532):0.09437,Q9UT12_SCHPO/114-212:0.81258):0.12802):0.34204,Q9SL49_ARATH/317-414:0.46442):0.24012,Q9ZU81_ARATH/255-351:0.06367,Q9ZT92_ARATH/343-439:0.23190);