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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03130 phylogeny
for nucleotide alignment


 
((((((((((((((Q9S334_PROMA/321-353,(((O75265_HUMAN/69-95,((Q17949_CAEEL/178-204,YJ40_YEAST/204-230),Q9V9U4_DROME/175-201)),(Q17949_CAEEL/28-54,O15781_BABBO/159-185)),Q9V9U4_DROME/23-49)),(PECF_MASLA/166-192,YPGR_BACSU/313-339)),(((Q9S334_PROMA/33-59,(P71324_FREDI/32-58,YCPY_PSEA9/32-58)),(((CPCE_SYNEL/214-241,RPCE_SYNPY/211-237),((CPCE_ANASP/210-236,CPCE_PSEA9/206-232),(CPCE_SYNP2/204-230,CPCE_SYNY3/204-230))),(PECE_ANASP/187-213,PECE_MASLA/191-217))),((((Q9Z3G5_SYNP7/17-43,(P72807_SYNY3/19-45,O15768_BABBI/38-64)),(Q55283_SYNSP/238-264,P74284_SYNY3/61-87)),(((P74284_SYNY3/187-213,(P72807_SYNY3/179-205,Q9Z3G5_SYNP7/177-203)),P72742_SYNY3/114-140),P74284_SYNY3/125-151)),((P72807_SYNY3/50-79,Q9Z3G5_SYNP7/48-77),((PECF_MASLA/126-160,RPCF_SYNPY/115-150),((CPCF_PSEA9/113-151,CPCF_SYNP2/111-137),((CPCF_SYNY3/162-190,CPCF_SYNP7/117-155),CPCF_SYNY3/119-157))))))),(((O27834_METTH/137-163,((Q9ZNK2_CLOHI/173-199,RPCE_SYNPY/71-97),(O27750_METTH/101-127,O26289_METTH/69-95))),(((((O27750_METTH/31-57,O27834_METTH/75-101),((O26289_METTH/8-33,O27750_METTH/194-219),O27431_METTH/54-80)),(O27750_METTH/70-96,O27750_METTH/259-285)),(O27431_METTH/23-49,O27834_METTH/106-132)),(P74284_SYNY3/93-119,O26289_METTH/38-64))),(((CPCF_SYNEL/112-151,(Q9S334_PROMA/69-95,Q9S334_PROMA/165-192)),O27750_METTH/163-189),((YCPY_PSEA9/386-411,O27431_METTH/85-111),(((YJ40_YEAST/268-294,(Q17949_CAEEL/92-118,((Q17949_CAEEL/243-269,Q9V9U4_DROME/239-265),(O75265_HUMAN/133-159,Q9V9U4_DROME/87-113)))),YJ40_YEAST/110-136),O43977_BABBO/103-129))))),((((P72807_SYNY3/85-111,Q55283_SYNSP/143-169),Q9Z3G5_SYNP7/83-109),(((Q9RJS9_STRCO/161-186,Q55283_SYNSP/300-326),((P74527_SYNY3/777-802,P97030_BACSU/349-375),((P71324_FREDI/99-127,YCPY_PSEA9/99-127),P97030_BACSU/381-407))),Q9RJS9_STRCO/191-217)),((((YPGR_BACSU/251-277,((MPEV_SYNPY/62-87,Q9S332_PROMA/59-84),MPEU_SYNPY/59-84)),(MPEU_SYNPY/90-116,(MPEV_SYNPY/93-119,Q9S332_PROMA/90-116))),YPGR_BACSU/282-308),(((((CPCE_SYNP7/142-168,(((CPCE_ANASP/147-173,((CPCE_SYNEL/151-177,CPCE_SYNY3/141-167),CPCE_SYNP2/141-167)),CPCE_PSEA9/140-166),CPCE_FREDI/161-187)),((MPEV_SYNPY/125-150,CPCF_SYNP7/161-185),(Q9RJS9_STRCO/222-248,O43977_BABBO/273-307))),((P71324_FREDI/68-94,YCPY_PSEA9/68-94),(((Q44295_9NOST/123-148,Q9ZNK2_CLOHI/111-137),((MPEU_SYNPY/251-277,Q9S332_PROMA/251-277),MPEV_SYNPY/254-280)),RPCE_SYNPY/102-128))),((CPCE_FREDI/118-144,CPCE_PSEA9/100-126),CPCE_ANASP/104-130)),((((P74284_SYNY3/156-182,P74527_SYNY3/706-733),(P72807_SYNY3/148-174,Q9Z3G5_SYNP7/146-172)),((((CPCF_SYNP7/55-80,(CPCF_SYNP2/49-74,CPCF_SYNY3/57-82)),CPCF_PSEA9/51-76),CPCF_SYNEL/50-75),RPCF_SYNPY/53-78)),((P71324_FREDI/355-381,YCPY_PSEA9/355-381),(O27750_METTH/224-250,((P72807_SYNY3/117-143,Q9Z3G5_SYNP7/115-141),(P71325_FREDI/150-176,YCPZ_PSEA9/149-175))))))))),(((Q9S332_PROMA/219-245,(O27834_METTH/16-40,O27834_METTH/45-70)),(CPCF_SYNP2/18-44,(CPCF_SYNEL/19-45,(((CPCF_PSEA9/20-46,CPCF_SYNY3/26-52),RPCF_SYNPY/22-48),CPCF_SYNP7/24-50)))),(((MPEU_SYNPY/184-214,Q44295_9NOST/182-208),(MPEV_SYNPY/222-249,(P74527_SYNY3/600-626,(CPCF_SYNP2/154-182,Q9S332_PROMA/184-214)))),((Q46749_ECOLI/208-234,P74527_SYNY3/568-594),MPEU_SYNPY/219-246)))),(P74284_SYNY3/30-56,P74527_SYNY3/665-698)),(((((P71325_FREDI/18-44,YCPZ_PSEA9/17-43),(PECF_MASLA/21-52,((Q9RJS9_STRCO/289-315,((((((PECF_MASLA/90-116,RPCF_SYNPY/83-109),CPCF_PSEA9/81-107),CPCF_SYNP2/79-105),CPCF_SYNY3/87-113),CPCF_SYNEL/80-106),(Q55283_SYNSP/112-138,CPCF_SYNP7/85-111))),Q44295_9NOST/151-177))),(MPEU_SYNPY/122-147,Q9S332_PROMA/122-147)),Q46749_ECOLI/144-170),((PECF_MASLA/59-84,(P71325_FREDI/119-144,YCPZ_PSEA9/118-143)),(P71325_FREDI/49-74,YCPZ_PSEA9/48-73)))),(((Q44295_9NOST/91-117,CPCE_SYNP7/99-125),((P72742_SYNY3/82-108,CPCE_SYNY3/98-124),((Q9S334_PROMA/100-124,P72742_SYNY3/51-77),(CPCE_SYNP2/98-124,CPCE_SYNEL/108-134)))),(((((CPCE_SYNP2/67-93,(CPCE_SYNP7/68-94,CPCE_SYNEL/77-103)),((Q44295_9NOST/59-84,P72742_SYNY3/145-177),CPCE_FREDI/87-113)),PECE_MASLA/65-91),(((((O43977_BABBO/70-96,O15781_BABBO/192-218),Q17949_CAEEL/210-236),(Q9V9U4_DROME/206-232,(CPCF_SYNEL/156-182,O75265_HUMAN/100-126))),((YJ40_YEAST/77-103,(Q17949_CAEEL/59-85,Q9V9U4_DROME/54-80)),YJ40_YEAST/235-261)),(P72742_SYNY3/183-217,(CPCE_SYNY3/27-55,((CPCE_PSEA9/29-57,(CPCE_SYNP7/28-56,RPCE_SYNPY/30-58)),((((CPCE_ANASP/33-61,CPCE_SYNP2/27-55),CPCE_SYNEL/31-65),PECE_MASLA/27-53),O85493_9SYNC/31-59)))))),RPCE_SYNPY/179-206))),((Q9ZNK2_CLOHI/142-168,(P71325_FREDI/80-114,YCPZ_PSEA9/79-113)),Q44295_9NOST/353-379)),(((PECE_ANASP/93-119,PECE_MASLA/97-123),((Q44295_9NOST/281-307,P74527_SYNY3/632-658),P74527_SYNY3/739-765)),Q44295_9NOST/248-274)),(CPCE_SYNP2/172-199,CPCE_SYNP7/173-200)),(CPCE_ANASP/178-205,(((CPCE_SYNEL/182-209,CPCE_SYNY3/172-199),CPCE_PSEA9/171-201),CPCE_FREDI/192-224))),PECE_ANASP/155-182,PECE_MASLA/159-186);
((((((((((((((Q9S334_PROMA/321-353:0.60619,(((O75265_HUMAN/69-95:0.23433,((Q17949_CAEEL/178-204:0.39311,YJ40_YEAST/204-230:0.27254):0.14525,Q9V9U4_DROME/175-201:0.24204):0.07568):0.17722,(Q17949_CAEEL/28-54:0.45312,O15781_BABBO/159-185:0.49297):0.08048):0.09343,Q9V9U4_DROME/23-49:0.20852):0.36375):0.00000,(PECF_MASLA/166-192:0.64319,YPGR_BACSU/313-339:0.27362):0.13061):0.10396,(((Q9S334_PROMA/33-59:0.56561,(P71324_FREDI/32-58:0.27368,YCPY_PSEA9/32-58:0.13106):0.35929):0.18446,(((CPCE_SYNEL/214-241:0.51211,RPCE_SYNPY/211-237:0.36385):0.05222,((CPCE_ANASP/210-236:0.18623,CPCE_PSEA9/206-232:0.27125):0.05201,(CPCE_SYNP2/204-230:0.11886,CPCE_SYNY3/204-230:0.21201):0.17889):0.25730):0.19263,(PECE_ANASP/187-213:0.19848,PECE_MASLA/191-217:0.22657):0.08713):0.24472):0.13382,((((Q9Z3G5_SYNP7/17-43:0.34664,(P72807_SYNY3/19-45:0.61284,O15768_BABBI/38-64:0.67841):0.15656):0.30945,(Q55283_SYNSP/238-264:0.60732,P74284_SYNY3/61-87:0.39659):0.05021):0.35301,(((P74284_SYNY3/187-213:0.42081,(P72807_SYNY3/179-205:0.55559,Q9Z3G5_SYNP7/177-203:0.20839):0.37648):0.15351,P72742_SYNY3/114-140:0.25854):0.20757,P74284_SYNY3/125-151:0.27892):0.08726):0.18351,((P72807_SYNY3/50-79:0.43857,Q9Z3G5_SYNP7/48-77:0.27531):0.20000,((PECF_MASLA/126-160:0.34164,RPCF_SYNPY/115-150:0.47681):0.08632,((CPCF_PSEA9/113-151:0.24684,CPCF_SYNP2/111-137:0.38916):0.15946,((CPCF_SYNY3/162-190:0.56416,CPCF_SYNP7/117-155:0.18360):0.30970,CPCF_SYNY3/119-157:0.30189):0.25540):0.13574):0.05590):0.05725):0.06266):0.09650):0.08944,(((O27834_METTH/137-163:0.13421,((Q9ZNK2_CLOHI/173-199:0.53322,RPCE_SYNPY/71-97:0.35586):0.28220,(O27750_METTH/101-127:0.46726,O26289_METTH/69-95:0.47579):0.23149):0.08305):0.27861,(((((O27750_METTH/31-57:0.24362,O27834_METTH/75-101:0.38860):0.09699,((O26289_METTH/8-33:0.24132,O27750_METTH/194-219:0.39517):0.10268,O27431_METTH/54-80:0.32543):0.11116):0.11777,(O27750_METTH/70-96:0.12441,O27750_METTH/259-285:0.52264):0.17784):0.04718,(O27431_METTH/23-49:0.43363,O27834_METTH/106-132:0.10363):0.18435):0.06452,(P74284_SYNY3/93-119:0.45616,O26289_METTH/38-64:0.24380):0.03698):0.03246):0.12049,(((CPCF_SYNEL/112-151:0.47846,(Q9S334_PROMA/69-95:0.24918,Q9S334_PROMA/165-192:0.68407):0.16415):0.09394,O27750_METTH/163-189:0.33043):0.17913,((YCPY_PSEA9/386-411:0.66881,O27431_METTH/85-111:0.24409):0.10967,(((YJ40_YEAST/268-294:0.22102,(Q17949_CAEEL/92-118:0.32126,((Q17949_CAEEL/243-269:0.11706,Q9V9U4_DROME/239-265:0.25652):0.23892,(O75265_HUMAN/133-159:0.34995,Q9V9U4_DROME/87-113:0.18634):0.16809):0.09540):0.02280):0.16264,YJ40_YEAST/110-136:0.32886):0.05011,O43977_BABBO/103-129:0.31559):0.21293):0.12532):0.06541):0.05189):0.16282,((((P72807_SYNY3/85-111:0.22514,Q55283_SYNSP/143-169:0.89593):0.16049,Q9Z3G5_SYNP7/83-109:0.23060):0.41151,(((Q9RJS9_STRCO/161-186:0.36971,Q55283_SYNSP/300-326:0.97182):0.10783,((P74527_SYNY3/777-802:0.64421,P97030_BACSU/349-375:0.56958):0.19056,((P71324_FREDI/99-127:0.27277,YCPY_PSEA9/99-127:0.29822):0.30038,P97030_BACSU/381-407:0.22464):0.13044):0.05448):0.12130,Q9RJS9_STRCO/191-217:0.48670):0.15501):0.29558,((((YPGR_BACSU/251-277:0.56325,((MPEV_SYNPY/62-87:0.55277,Q9S332_PROMA/59-84:0.22699):0.12208,MPEU_SYNPY/59-84:0.14418):0.14938):0.05899,(MPEU_SYNPY/90-116:0.31078,(MPEV_SYNPY/93-119:0.40210,Q9S332_PROMA/90-116:0.22796):0.10575):0.25070):0.15237,YPGR_BACSU/282-308:0.28276):0.21152,(((((CPCE_SYNP7/142-168:0.34927,(((CPCE_ANASP/147-173:0.08537,((CPCE_SYNEL/151-177:0.32424,CPCE_SYNY3/141-167:0.26386):0.04298,CPCE_SYNP2/141-167:0.19039):0.09909):0.06680,CPCE_PSEA9/140-166:0.27679):0.11403,CPCE_FREDI/161-187:0.17491):0.04397):0.30179,((MPEV_SYNPY/125-150:0.37883,CPCF_SYNP7/161-185:0.37382):0.15183,(Q9RJS9_STRCO/222-248:0.37853,O43977_BABBO/273-307:0.66324):0.23641):0.12465):0.07709,((P71324_FREDI/68-94:0.23739,YCPY_PSEA9/68-94:0.29696):0.22188,(((Q44295_9NOST/123-148:0.40406,Q9ZNK2_CLOHI/111-137:0.48011):0.19721,((MPEU_SYNPY/251-277:0.38145,Q9S332_PROMA/251-277:0.59925):0.06308,MPEV_SYNPY/254-280:0.23908):0.15390):0.26817,RPCE_SYNPY/102-128:0.31396):0.10355):0.16821):0.12438,((CPCE_FREDI/118-144:0.06364,CPCE_PSEA9/100-126:0.33422):0.20662,CPCE_ANASP/104-130:0.16339):0.21882):0.17193,((((P74284_SYNY3/156-182:0.23799,P74527_SYNY3/706-733:0.40866):0.26459,(P72807_SYNY3/148-174:0.44752,Q9Z3G5_SYNP7/146-172:0.17461):0.07783):0.14160,((((CPCF_SYNP7/55-80:0.31948,(CPCF_SYNP2/49-74:0.26933,CPCF_SYNY3/57-82:0.13660):0.11711):0.12470,CPCF_PSEA9/51-76:0.31530):0.04581,CPCF_SYNEL/50-75:0.37752):0.11411,RPCF_SYNPY/53-78:0.41979):0.28915):0.02430,((P71324_FREDI/355-381:0.05363,YCPY_PSEA9/355-381:0.30018):0.18720,(O27750_METTH/224-250:0.43642,((P72807_SYNY3/117-143:0.04753,Q9Z3G5_SYNP7/115-141:0.23626):0.24942,(P71325_FREDI/150-176:0.15060,YCPZ_PSEA9/149-175:0.34598):0.33260):0.26278):0.20640):0.11863):0.09835):0.02312):0.00000):0.04523):0.04463,(((Q9S332_PROMA/219-245:0.63728,(O27834_METTH/16-40:0.32034,O27834_METTH/45-70:0.40123):0.14810):0.19314,(CPCF_SYNP2/18-44:0.31945,(CPCF_SYNEL/19-45:0.43118,(((CPCF_PSEA9/20-46:0.18313,CPCF_SYNY3/26-52:0.73229):0.07109,RPCF_SYNPY/22-48:0.44537):0.11658,CPCF_SYNP7/24-50:0.40882):0.22803):0.12754):0.16558):0.10804,(((MPEU_SYNPY/184-214:0.42219,Q44295_9NOST/182-208:0.36551):0.17268,(MPEV_SYNPY/222-249:0.50044,(P74527_SYNY3/600-626:0.49108,(CPCF_SYNP2/154-182:0.57305,Q9S332_PROMA/184-214:0.35130):0.34126):0.20861):0.00000):0.10053,((Q46749_ECOLI/208-234:0.46278,P74527_SYNY3/568-594:0.37806):0.17893,MPEU_SYNPY/219-246:0.38694):0.17073):0.00000):0.12956):0.03411,(P74284_SYNY3/30-56:0.75022,P74527_SYNY3/665-698:0.21494):0.18579):0.02640,(((((P71325_FREDI/18-44:0.19765,YCPZ_PSEA9/17-43:0.32106):0.29276,(PECF_MASLA/21-52:0.48147,((Q9RJS9_STRCO/289-315:0.70074,((((((PECF_MASLA/90-116:0.33241,RPCF_SYNPY/83-109:0.39752):0.16446,CPCF_PSEA9/81-107:0.26848):0.08422,CPCF_SYNP2/79-105:0.17571):0.14472,CPCF_SYNY3/87-113:0.31774):0.07877,CPCF_SYNEL/80-106:0.47359):0.09302,(Q55283_SYNSP/112-138:0.62031,CPCF_SYNP7/85-111:0.12517):0.04728):0.21857):0.07084,Q44295_9NOST/151-177:0.39095):0.29189):0.07812):0.07902,(MPEU_SYNPY/122-147:0.05236,Q9S332_PROMA/122-147:0.49261):0.29267):0.06151,Q46749_ECOLI/144-170:0.29484):0.14348,((PECF_MASLA/59-84:0.48144,(P71325_FREDI/119-144:0.12197,YCPZ_PSEA9/118-143:0.23492):0.16621):0.07137,(P71325_FREDI/49-74:0.17259,YCPZ_PSEA9/48-73:0.18656):0.21805):0.17833):0.05172):0.09874,(((Q44295_9NOST/91-117:0.40454,CPCE_SYNP7/99-125:0.27979):0.11572,((P72742_SYNY3/82-108:0.57813,CPCE_SYNY3/98-124:0.24831):0.18813,((Q9S334_PROMA/100-124:0.71125,P72742_SYNY3/51-77:0.31441):0.26689,(CPCE_SYNP2/98-124:0.25742,CPCE_SYNEL/108-134:0.22155):0.17755):0.02504):0.02310):0.18563,(((((CPCE_SYNP2/67-93:0.20916,(CPCE_SYNP7/68-94:0.25577,CPCE_SYNEL/77-103:0.15130):0.09363):0.06148,((Q44295_9NOST/59-84:0.36528,P72742_SYNY3/145-177:0.62351):0.15071,CPCE_FREDI/87-113:0.21898):0.12587):0.10564,PECE_MASLA/65-91:0.26165):0.08647,(((((O43977_BABBO/70-96:0.37048,O15781_BABBO/192-218:0.34380):0.16399,Q17949_CAEEL/210-236:0.38914):0.15512,(Q9V9U4_DROME/206-232:0.37899,(CPCF_SYNEL/156-182:0.62457,O75265_HUMAN/100-126:0.15080):0.23896):0.13764):0.03803,((YJ40_YEAST/77-103:0.25848,(Q17949_CAEEL/59-85:0.12706,Q9V9U4_DROME/54-80:0.32700):0.26246):0.00000,YJ40_YEAST/235-261:0.30168):0.10982):0.16267,(P72742_SYNY3/183-217:0.47606,(CPCE_SYNY3/27-55:0.22331,((CPCE_PSEA9/29-57:0.17617,(CPCE_SYNP7/28-56:0.06898,RPCE_SYNPY/30-58:0.40623):0.11441):0.06884,((((CPCE_ANASP/33-61:0.15163,CPCE_SYNP2/27-55:0.24434):0.04022,CPCE_SYNEL/31-65:0.27132):0.02295,PECE_MASLA/27-53:0.38037):0.08474,O85493_9SYNC/31-59:0.17914):0.02435):0.06526):0.13724):0.20027):0.10061):0.06788,RPCE_SYNPY/179-206:0.56549):0.00492):0.10428):0.08669,((Q9ZNK2_CLOHI/142-168:0.61417,(P71325_FREDI/80-114:0.31819,YCPZ_PSEA9/79-113:0.09902):0.09796):0.11899,Q44295_9NOST/353-379:0.38812):0.09992):0.00000,(((PECE_ANASP/93-119:0.27574,PECE_MASLA/97-123:0.14057):0.24162,((Q44295_9NOST/281-307:0.49219,P74527_SYNY3/632-658:0.38142):0.27616,P74527_SYNY3/739-765:0.48893):0.15740):0.33581,Q44295_9NOST/248-274:0.39338):0.08772):0.32750,(CPCE_SYNP2/172-199:0.26749,CPCE_SYNP7/173-200:0.36668):0.18986):0.00000,(CPCE_ANASP/178-205:0.29478,(((CPCE_SYNEL/182-209:0.24743,CPCE_SYNY3/172-199:0.32811):0.22615,CPCE_PSEA9/171-201:0.10722):0.05667,CPCE_FREDI/192-224:0.20499):0.18431):0.12177):0.26225,PECE_ANASP/155-182:0.00950,PECE_MASLA/159-186:0.30878);