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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03130 phylogeny
for amino acid alignment


 
(((((((((((((((((YJ40_YEAST/110-136,((O43977_BABBO/273-307,O43977_BABBO/103-129),((Q17949_CAEEL/92-118,((O75265_HUMAN/133-159,(Q17949_CAEEL/243-269,Q9V9U4_DROME/239-265)),YJ40_YEAST/268-294)),Q9V9U4_DROME/87-113))),(((CPCF_PSEA9/113-151,((CPCF_SYNP7/117-155,CPCF_SYNY3/119-157),CPCF_SYNP2/111-137)),((P72807_SYNY3/85-111,Q9Z3G5_SYNP7/83-109),CPCF_SYNEL/112-151)),(((Q44295_9NOST/281-307,P74527_SYNY3/632-658),((MPEU_SYNPY/251-277,Q9S332_PROMA/251-277),MPEV_SYNPY/254-280)),((Q9S334_PROMA/69-95,(P71324_FREDI/68-94,YCPY_PSEA9/68-94)),Q9S334_PROMA/165-192)))),((((P72807_SYNY3/117-143,Q9Z3G5_SYNP7/115-141),(P71325_FREDI/150-176,YCPZ_PSEA9/149-175)),(((CPCF_SYNY3/87-113,(CPCF_SYNP2/79-105,(CPCF_PSEA9/81-107,(CPCF_SYNEL/80-106,CPCF_SYNP7/85-111)))),RPCF_SYNPY/83-109),PECF_MASLA/90-116)),(((P72807_SYNY3/179-205,((P74284_SYNY3/187-213,Q9RJS9_STRCO/289-315),Q9Z3G5_SYNP7/177-203)),((Q55283_SYNSP/112-138,Q55283_SYNSP/238-264),Q55283_SYNSP/143-169)),Q44295_9NOST/353-379))),((Q9ZNK2_CLOHI/173-199,(O26289_METTH/69-95,O27750_METTH/101-127)),O27834_METTH/137-163)),((((O15768_BABBI/38-64,(P74284_SYNY3/30-56,(P72807_SYNY3/19-45,Q9Z3G5_SYNP7/17-43))),((Q9V9U4_DROME/23-49,(Q9S334_PROMA/321-353,Q17949_CAEEL/28-54)),(O15781_BABBO/159-185,(((Q17949_CAEEL/178-204,Q9V9U4_DROME/175-201),YJ40_YEAST/204-230),O75265_HUMAN/69-95)))),(Q9ZNK2_CLOHI/111-137,((CPCF_PSEA9/20-46,(CPCF_SYNP2/18-44,((CPCF_SYNY3/26-52,CPCF_SYNP7/24-50),CPCF_SYNEL/19-45))),RPCF_SYNPY/22-48))),((P97030_BACSU/349-375,((Q9S334_PROMA/100-124,RPCE_SYNPY/71-97),(Q55283_SYNSP/300-326,PECF_MASLA/21-52))),((O27834_METTH/16-40,O27834_METTH/45-70),((P71325_FREDI/18-44,YCPZ_PSEA9/17-43),Q9S334_PROMA/33-59))))),Q9S332_PROMA/219-245),(((P72742_SYNY3/183-217,((CPCE_ANASP/33-61,((PECE_MASLA/27-53,CPCE_SYNEL/31-65),((O85493_9SYNC/31-59,CPCE_SYNY3/27-55),((RPCE_SYNPY/30-58,CPCE_SYNP7/28-56),CPCE_PSEA9/29-57)))),CPCE_SYNP2/27-55)),((P71325_FREDI/80-114,YCPZ_PSEA9/79-113),(((P71324_FREDI/32-58,YCPY_PSEA9/32-58),Q44295_9NOST/151-177),RPCF_SYNPY/115-150))),((((PECE_ANASP/187-213,PECE_MASLA/191-217),(RPCE_SYNPY/211-237,(((CPCE_ANASP/210-236,CPCE_PSEA9/206-232),(CPCE_SYNP2/204-230,CPCE_SYNY3/204-230)),CPCE_SYNEL/214-241))),((P74284_SYNY3/156-182,(CPCE_SYNP7/142-168,(((CPCE_PSEA9/140-166,CPCE_ANASP/147-173),((CPCE_SYNEL/151-177,CPCE_SYNP2/141-167),CPCE_SYNY3/141-167)),CPCE_FREDI/161-187))),P74527_SYNY3/706-733)),((YCPY_PSEA9/386-411,((PECF_MASLA/166-192,(CPCF_SYNEL/156-182,CPCF_SYNP7/161-185)),((CPCF_SYNP2/154-182,CPCF_SYNY3/162-190),(P72807_SYNY3/50-79,Q9Z3G5_SYNP7/48-77)))),(PECF_MASLA/59-84,((CPCF_SYNP7/55-80,(CPCF_PSEA9/51-76,(CPCF_SYNEL/50-75,(CPCF_SYNP2/49-74,CPCF_SYNY3/57-82)))),RPCF_SYNPY/53-78)))))),((((O27834_METTH/75-101,(((O26289_METTH/8-33,O27750_METTH/194-219),O27431_METTH/54-80),YPGR_BACSU/282-308)),((O27431_METTH/23-49,YPGR_BACSU/313-339),(O27834_METTH/106-132,P72742_SYNY3/51-77))),((O27750_METTH/259-285,PECF_MASLA/126-160),(O27750_METTH/70-96,P74284_SYNY3/93-119))),((((CPCE_FREDI/87-113,((CPCE_SYNP7/68-94,PECE_MASLA/65-91),CPCE_SYNEL/77-103)),((Q44295_9NOST/59-84,CPCE_SYNP2/67-93),Q9ZNK2_CLOHI/142-168)),(((MPEU_SYNPY/90-116,(MPEV_SYNPY/93-119,Q9S332_PROMA/90-116)),(((P71325_FREDI/49-74,YCPZ_PSEA9/48-73),((MPEU_SYNPY/59-84,MPEV_SYNPY/62-87),Q9S332_PROMA/59-84)),P72742_SYNY3/145-177)),((Q46749_ECOLI/144-170,O27431_METTH/85-111),(((P72742_SYNY3/114-140,(PECE_ANASP/93-119,PECE_MASLA/97-123)),((CPCE_SYNEL/108-134,(O27750_METTH/224-250,(P71324_FREDI/355-381,YCPY_PSEA9/355-381))),CPCE_SYNY3/98-124)),(CPCE_SYNP2/98-124,((CPCE_FREDI/118-144,CPCE_PSEA9/100-126),(CPCE_ANASP/104-130,(CPCE_SYNP7/99-125,RPCE_SYNPY/102-128)))))))),((O27750_METTH/31-57,(Q46749_ECOLI/208-234,P74284_SYNY3/125-151)),O27750_METTH/163-189)))),(((MPEU_SYNPY/219-246,O26289_METTH/38-64),Q44295_9NOST/91-117),((((((Q9V9U4_DROME/206-232,((O75265_HUMAN/100-126,Q17949_CAEEL/210-236),YJ40_YEAST/235-261)),O15781_BABBO/192-218),((Q17949_CAEEL/59-85,Q9V9U4_DROME/54-80),YJ40_YEAST/77-103)),O43977_BABBO/70-96),(P74527_SYNY3/600-626,MPEV_SYNPY/222-249)),((((MPEU_SYNPY/184-214,Q9S332_PROMA/184-214),Q44295_9NOST/182-208),(P72807_SYNY3/148-174,Q9Z3G5_SYNP7/146-172)),(P74284_SYNY3/61-87,YPGR_BACSU/251-277))))),((((P71324_FREDI/99-127,YCPY_PSEA9/99-127),P97030_BACSU/381-407),(P72742_SYNY3/82-108,((P71325_FREDI/119-144,YCPZ_PSEA9/118-143),P74527_SYNY3/568-594))),(((P74527_SYNY3/665-698,P74527_SYNY3/739-765),((P74527_SYNY3/777-802,Q44295_9NOST/123-148),Q9RJS9_STRCO/222-248)),(MPEV_SYNPY/125-150,(MPEU_SYNPY/122-147,Q9S332_PROMA/122-147))))),(Q44295_9NOST/248-274,Q9RJS9_STRCO/161-186)),Q9RJS9_STRCO/191-217),RPCE_SYNPY/179-206),CPCE_SYNP7/173-200),CPCE_SYNP2/172-199),((CPCE_ANASP/178-205,(CPCE_FREDI/192-224,CPCE_PSEA9/171-201)),(CPCE_SYNEL/182-209,CPCE_SYNY3/172-199))),PECE_ANASP/155-182,PECE_MASLA/159-186);
(((((((((((((((((YJ40_YEAST/110-136:0.32298,((O43977_BABBO/273-307:0.85685,O43977_BABBO/103-129:0.33686):0.00000,((Q17949_CAEEL/92-118:0.17675,((O75265_HUMAN/133-159:0.43969,(Q17949_CAEEL/243-269:0.10932,Q9V9U4_DROME/239-265:0.26013):0.11517):0.15650,YJ40_YEAST/268-294:0.12008):0.12320):0.13189,Q9V9U4_DROME/87-113:0.27051):0.10353):0.19601):0.35055,(((CPCF_PSEA9/113-151:0.23162,((CPCF_SYNP7/117-155:0.68304,CPCF_SYNY3/119-157:0.39786):0.12054,CPCF_SYNP2/111-137:0.53880):0.21262):0.12299,((P72807_SYNY3/85-111:0.57807,Q9Z3G5_SYNP7/83-109:0.16711):0.74684,CPCF_SYNEL/112-151:0.35546):0.06183):0.24459,(((Q44295_9NOST/281-307:1.10159,P74527_SYNY3/632-658:0.30898):0.39135,((MPEU_SYNPY/251-277:0.52777,Q9S332_PROMA/251-277:0.57904):0.06918,MPEV_SYNPY/254-280:0.33607):0.47646):0.03261,((Q9S334_PROMA/69-95:0.68601,(P71324_FREDI/68-94:0.26828,YCPY_PSEA9/68-94:0.01509):0.40485):0.25508,Q9S334_PROMA/165-192:1.09917):0.34552):0.00000):0.28926):0.00000,((((P72807_SYNY3/117-143:0.20089,Q9Z3G5_SYNP7/115-141:0.12806):0.34727,(P71325_FREDI/150-176:0.05880,YCPZ_PSEA9/149-175:0.44415):0.48899):0.07220,(((CPCF_SYNY3/87-113:0.19787,(CPCF_SYNP2/79-105:0.37730,(CPCF_PSEA9/81-107:0.37385,(CPCF_SYNEL/80-106:0.60888,CPCF_SYNP7/85-111:0.19296):0.18792):0.05929):0.07894):0.24241,RPCF_SYNPY/83-109:0.27607):0.26236,PECF_MASLA/90-116:0.40556):0.54206):0.65156,(((P72807_SYNY3/179-205:0.44250,((P74284_SYNY3/187-213:0.64913,Q9RJS9_STRCO/289-315:0.64510):0.35359,Q9Z3G5_SYNP7/177-203:0.25252):0.00000):0.15759,((Q55283_SYNSP/112-138:0.49826,Q55283_SYNSP/238-264:0.86803):0.46565,Q55283_SYNSP/143-169:0.77086):0.63975):0.28887,Q44295_9NOST/353-379:0.73289):0.56945):0.08879):0.22367,((Q9ZNK2_CLOHI/173-199:0.61180,(O26289_METTH/69-95:0.50770,O27750_METTH/101-127:0.74630):0.27927):0.18176,O27834_METTH/137-163:0.34615):0.20977):0.17225,((((O15768_BABBI/38-64:0.82110,(P74284_SYNY3/30-56:0.32204,(P72807_SYNY3/19-45:0.68416,Q9Z3G5_SYNP7/17-43:0.50750):0.26758):0.03326):0.47541,((Q9V9U4_DROME/23-49:0.31289,(Q9S334_PROMA/321-353:1.17625,Q17949_CAEEL/28-54:0.21470):0.34621):0.00546,(O15781_BABBO/159-185:0.63842,(((Q17949_CAEEL/178-204:0.23797,Q9V9U4_DROME/175-201:0.27002):0.12295,YJ40_YEAST/204-230:0.37092):0.10019,O75265_HUMAN/69-95:0.21515):0.35305):0.23650):0.00087):0.58794,(Q9ZNK2_CLOHI/111-137:0.59689,((CPCF_PSEA9/20-46:0.37357,(CPCF_SYNP2/18-44:0.37457,((CPCF_SYNY3/26-52:0.61179,CPCF_SYNP7/24-50:0.29586):0.08426,CPCF_SYNEL/19-45:0.62414):0.02993):0.30237):0.00000,RPCF_SYNPY/22-48:0.55105):0.82278):0.68445):0.17174,((P97030_BACSU/349-375:0.49549,((Q9S334_PROMA/100-124:1.08424,RPCE_SYNPY/71-97:0.47590):0.23085,(Q55283_SYNSP/300-326:0.18086,PECF_MASLA/21-52:1.13313):0.59004):0.32069):0.72285,((O27834_METTH/16-40:1.01687,O27834_METTH/45-70:0.17151):0.30236,((P71325_FREDI/18-44:0.18526,YCPZ_PSEA9/17-43:0.47223):0.54908,Q9S334_PROMA/33-59:0.92815):0.16461):0.00000):0.54701):0.09976):0.00000,Q9S332_PROMA/219-245:2.07880):0.00000,(((P72742_SYNY3/183-217:0.88142,((CPCE_ANASP/33-61:0.11168,((PECE_MASLA/27-53:0.52530,CPCE_SYNEL/31-65:0.16853):0.00000,((O85493_9SYNC/31-59:0.00000,CPCE_SYNY3/27-55:0.39271):0.14071,((RPCE_SYNPY/30-58:0.47724,CPCE_SYNP7/28-56:0.14734):0.10638,CPCE_PSEA9/29-57:0.09551):0.05914):0.19859):0.09121):0.14405,CPCE_SYNP2/27-55:0.19193):0.34947):0.00000,((P71325_FREDI/80-114:0.20239,YCPZ_PSEA9/79-113:0.00000):0.56956,(((P71324_FREDI/32-58:0.17538,YCPY_PSEA9/32-58:0.11711):0.58986,Q44295_9NOST/151-177:0.80979):0.34700,RPCF_SYNPY/115-150:0.44525):0.05464):0.25220):0.25423,((((PECE_ANASP/187-213:0.24329,PECE_MASLA/191-217:0.13159):0.06071,(RPCE_SYNPY/211-237:0.40979,(((CPCE_ANASP/210-236:0.13847,CPCE_PSEA9/206-232:0.19465):0.17024,(CPCE_SYNP2/204-230:0.11615,CPCE_SYNY3/204-230:0.19373):0.13369):0.11766,CPCE_SYNEL/214-241:0.77651):0.12544):0.60535):0.54982,((P74284_SYNY3/156-182:0.00000,(CPCE_SYNP7/142-168:0.36227,(((CPCE_PSEA9/140-166:0.37645,CPCE_ANASP/147-173:0.11874):0.01909,((CPCE_SYNEL/151-177:0.18085,CPCE_SYNP2/141-167:0.16883):0.00000,CPCE_SYNY3/141-167:0.22338):0.13423):0.09195,CPCE_FREDI/161-187:0.18126):0.11159):0.93025):0.54892,P74527_SYNY3/706-733:0.32261):0.20726):0.30789,((YCPY_PSEA9/386-411:1.27959,((PECF_MASLA/166-192:0.70353,(CPCF_SYNEL/156-182:1.11686,CPCF_SYNP7/161-185:0.14177):0.35445):0.39252,((CPCF_SYNP2/154-182:0.85304,CPCF_SYNY3/162-190:0.35149):0.31317,(P72807_SYNY3/50-79:0.43973,Q9Z3G5_SYNP7/48-77:0.18062):0.14494):0.30532):0.00000):0.10458,(PECF_MASLA/59-84:0.54881,((CPCF_SYNP7/55-80:0.35951,(CPCF_PSEA9/51-76:0.24066,(CPCF_SYNEL/50-75:0.32747,(CPCF_SYNP2/49-74:0.28279,CPCF_SYNY3/57-82:0.15299):0.10116):0.11213):0.00000):0.27064,RPCF_SYNPY/53-78:0.31164):0.26659):0.28540):0.05048):0.11995):0.20085):0.17369,((((O27834_METTH/75-101:0.49277,(((O26289_METTH/8-33:0.30406,O27750_METTH/194-219:0.54747):0.18245,O27431_METTH/54-80:0.56342):0.01101,YPGR_BACSU/282-308:0.54765):0.06179):0.15143,((O27431_METTH/23-49:0.39644,YPGR_BACSU/313-339:0.80477):0.07552,(O27834_METTH/106-132:0.18942,P72742_SYNY3/51-77:0.59443):0.07055):0.10814):0.00000,((O27750_METTH/259-285:0.55563,PECF_MASLA/126-160:0.47517):0.14237,(O27750_METTH/70-96:0.15060,P74284_SYNY3/93-119:1.02499):0.10237):0.07755):0.09351,((((CPCE_FREDI/87-113:0.08836,((CPCE_SYNP7/68-94:0.26664,PECE_MASLA/65-91:0.24669):0.18786,CPCE_SYNEL/77-103:0.03411):0.17000):0.10946,((Q44295_9NOST/59-84:0.83348,CPCE_SYNP2/67-93:0.02391):0.10051,Q9ZNK2_CLOHI/142-168:0.71724):0.17910):0.14192,(((MPEU_SYNPY/90-116:0.20667,(MPEV_SYNPY/93-119:0.26073,Q9S332_PROMA/90-116:0.26142):0.26444):0.29701,(((P71325_FREDI/49-74:0.09893,YCPZ_PSEA9/48-73:0.19774):0.26142,((MPEU_SYNPY/59-84:0.17266,MPEV_SYNPY/62-87:0.46428):0.17538,Q9S332_PROMA/59-84:0.29034):0.26516):0.12055,P72742_SYNY3/145-177:0.93876):0.22218):0.04289,((Q46749_ECOLI/144-170:0.55242,O27431_METTH/85-111:0.54195):0.17602,(((P72742_SYNY3/114-140:0.82531,(PECE_ANASP/93-119:0.31362,PECE_MASLA/97-123:0.02255):0.25847):0.28559,((CPCE_SYNEL/108-134:0.05353,(O27750_METTH/224-250:0.71862,(P71324_FREDI/355-381:0.14166,YCPY_PSEA9/355-381:0.11373):0.23696):0.24298):0.20167,CPCE_SYNY3/98-124:0.46768):0.15412):0.00000,(CPCE_SYNP2/98-124:0.26219,((CPCE_FREDI/118-144:0.03345,CPCE_PSEA9/100-126:0.29103):0.22494,(CPCE_ANASP/104-130:0.07208,(CPCE_SYNP7/99-125:0.21504,RPCE_SYNPY/102-128:0.46415):0.19059):0.15194):0.00505):0.19781):0.16340):0.11037):0.14020):0.05233,((O27750_METTH/31-57:0.58247,(Q46749_ECOLI/208-234:0.76983,P74284_SYNY3/125-151:0.20630):0.29846):0.14838,O27750_METTH/163-189:0.67361):0.20429):0.00000):0.23981):0.00000,(((MPEU_SYNPY/219-246:0.85124,O26289_METTH/38-64:0.21459):0.00000,Q44295_9NOST/91-117:0.86009):0.00000,((((((Q9V9U4_DROME/206-232:0.43130,((O75265_HUMAN/100-126:0.28535,Q17949_CAEEL/210-236:0.44251):0.03396,YJ40_YEAST/235-261:0.35911):0.10539):0.10832,O15781_BABBO/192-218:0.44605):0.21235,((Q17949_CAEEL/59-85:0.10449,Q9V9U4_DROME/54-80:0.31223):0.16031,YJ40_YEAST/77-103:0.45227):0.06138):0.06938,O43977_BABBO/70-96:0.42770):0.15653,(P74527_SYNY3/600-626:1.15821,MPEV_SYNPY/222-249:0.26209):0.58907):0.09997,((((MPEU_SYNPY/184-214:0.47149,Q9S332_PROMA/184-214:0.47694):0.30496,Q44295_9NOST/182-208:0.39691):0.43365,(P72807_SYNY3/148-174:0.27096,Q9Z3G5_SYNP7/146-172:0.19578):0.19484):0.39140,(P74284_SYNY3/61-87:0.40511,YPGR_BACSU/251-277:0.65444):0.20348):0.11878):0.33256):0.31042):0.00000,((((P71324_FREDI/99-127:0.21560,YCPY_PSEA9/99-127:0.30844):0.71589,P97030_BACSU/381-407:0.21605):0.24027,(P72742_SYNY3/82-108:0.32048,((P71325_FREDI/119-144:0.00000,YCPZ_PSEA9/118-143:0.23040):0.37500,P74527_SYNY3/568-594:0.76321):0.20457):0.21531):0.11027,(((P74527_SYNY3/665-698:0.38720,P74527_SYNY3/739-765:0.85574):0.20034,((P74527_SYNY3/777-802:0.90630,Q44295_9NOST/123-148:0.52096):0.23105,Q9RJS9_STRCO/222-248:0.67130):0.12973):0.34647,(MPEV_SYNPY/125-150:0.30843,(MPEU_SYNPY/122-147:0.04187,Q9S332_PROMA/122-147:0.49239):0.23472):0.40990):0.19115):0.00000):0.23140,(Q44295_9NOST/248-274:0.54446,Q9RJS9_STRCO/161-186:0.70093):0.22632):0.39247,Q9RJS9_STRCO/191-217:0.59809):0.25175,RPCE_SYNPY/179-206:0.80900):0.29306,CPCE_SYNP7/173-200:0.28422):0.14172,CPCE_SYNP2/172-199:0.37788):0.13775,((CPCE_ANASP/178-205:0.38443,(CPCE_FREDI/192-224:0.13310,CPCE_PSEA9/171-201:0.15057):0.00000):0.06059,(CPCE_SYNEL/182-209:0.25185,CPCE_SYNY3/172-199:0.20545):0.24433):0.07129):0.42446,PECE_ANASP/155-182:0.11114,PECE_MASLA/159-186:0.12854);