EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF03122 - Herpes_MCP)
Herpes virus major capsid protein
(Pfam reference: accession no. PF03122)
(Interpro reference: accession no. IPR000912)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
18 sequences @ 1449 aa
(ave. pairwise identity: 0.38)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 7.92)
nucleotides
(available for above)
17 sequences @ 4347 bp
(ave. pairwise identity: 0.46)
New Hampshire format
(total tree length: 6.79)
amino acids, restricted set
(corresp. to available nt seqs)
17 sequences @ 1449 aa
(ave. pairwise identity: 0.37)
New Hampshire format
(total tree length: 7.75)