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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03116 alignment
(8 sequences with 490 aa)


NQRB_HAEIN/38-405 GTVTHKNTHVRDALDSKRMMITVFLALFPAIFYGMYNVGNQAIPALNQLGNLDQL..-IANDWHYALASSLGLDLTANATWGSKMALGAIFFLPIYLVVFTVCTIWELLFSVVRGHEVNEGMFVSTILFALIVPPTLPLWQAALGITFGIIVAKEIFGGVGRNFMNPALAGRAFLFFAYPAQISGDTVWTA-------------.-------ADGFSGATAL--------------------------------------SQWSQ-------------------------GGQG----------ALQHTVTGA--------PITWMDAFVGN.-LPGSMGEVSTLAILIGGAVIVFTRIAAWRIIAGVMIGMIATSTLFNLIGSETN-------P.MFSMPWHWHFVLGGFALGMVFMATDPVSASFTNTGKWWYGALIGVMAVLIRTVNPAYPEGMMLAILFANL-------FAPIFDYIVVQANIKRR
NQRB_VIBAL/37-407 GIVTNKSSHVRDSVDLKRIMIMVWFAVFPAMFWGMYNAGGQAIAALNHMYAGDQLatVISGNWHYWLTEMLGGTIAADAGVGSKMLLGATYFLPIYATVFLVGGFWEVLFCMVRKHEVNEGFFVTSILFALIVPPTLPLWQAALGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDVVWTA-------------.-------ADGFSGATAL--------------------------------------SQWAQ-------------------------GGNG----------ALVNTVTGS--------PITWMDAFIGN.-IPGSIGEVSTLALMIGAAMIVYMRIASWRIIAGVMIGMIAVSTLFNVIGSDTN-------P.MFNMPWHWHLVLGGFAFGMFFMATDPVSASFTNKGKWWYGILIGAMCVMIRVVNPAYPEGMMLAILFANL-------FAPLFDHVVIEKNIKRR
NQRB_CHLTR/36-502 LHTPSSPPFVRDAVDVKRWMMLVVIALMPTIFAAVWNSGLQALVYQ----SSDPR..IMEAFLHISGFKSYFSFVSQEIGIGSVLFAGCKIFLPLLFISYAVGGTCEVLFAIIRKHKIAEGLLVTGMLYPLILPPTIPYWMAALGIAFGVVMGKELFGGTGMNILNPALTGRAFLFFTFPAKMSGD-VWVGSNPSRIKESLATMsSLAEKSHFDGFSQSTCLQVLNSTPPSVKRVHIDAIASNILNLEHVPTQDVLQTQFATWAESYPGLTVDQLSLEQLQNFVTTPITEGGLGLLPAHFDSACSLTEAVYGIG-------KFSTGNLFFGN.-ILGSLGETSTVACLLGAGLLLLTGIASWRTMLSFGLSAFFFAWFFKIMSILTTGNAGAWAPaKFFIPAYRHLCIGGLAFGLVFMATDPVSSPAMKLAKWLYGAFIGFLTILIRLINPAYPEGVMLAILLGNV-------FAPLFDNIALKQYRQRR
NQRB_CHLPN/36-502 IETPSKPPFIRDSVDVKRWMMLVVIALFPATFVAIWNSGLQSIVYS----SGNPV..LMEQFLHISGFGSYLSFVYKEIHIVPILWEGLKIFIPLLTISYVVGGTCEVLFAVVRGHKIAEGLLVTGILYPLTLPPTIPYWMAALGIAFGIVVSKELFGGTGMNILNPALSGRAFLFFTFPAKMSGD-VWVGSNPGVIKDSLMKMnSSTGKVLIDGFSQSTCLQTLNSTPPSVKRLHVDAIAANMLHIPHVPTQDVIHSQFSLWTETHPGWVLDNLTLTQLQTFVTAPVAEGGLGLLPTQFDSAYAITDVIYGIG-------KFSAGNLFWGN.-IIGSLGETSTFACLLGAIFLIVTGIASWRTMAAFGIGAFLTGWLFKFISVLIVGQNGAWAPaRFFIPAYRQLFLGGLAFGLVFMATDPVSSPTMKLGKWIYGFFIGFMTIVIRLINPAYPEGVMLAILLGNV-------FAPLIDYFAVRKYRKRG
Q9WY87_THEMA/2-316 KLISAYAPHLREEDDVRKIMLDVLIALSPAVIGAAYFFGWYALFLC---------..--------------------------IAGAVIGELFDIFVMRYLRG-VKDFVPDGS----GAV----TGLLLAMNVSTRLPFWAFLLGLVFALGIGKHVFGGLGQNIFNPALVGRAFLLISFPTYMT---TWVV----------P--.-------GAGFWKSPAD--------------------------------------------------------------------VVTAATP------LALFKEHGVFT--------PYWD-LFIGK.-VGGSLGETSALLLIIGFIYLLLRKRVKIFIPVSYIGTVLVFSSIAYLMNPRYG--------.----DPLFHLLSGGLMLGALFMATDMVTSPITAKGQVIFGIGCGVLTMAIRLFG-AYPEGVSFSILFMNA-------LVPLIDRYTRPRIFGEV
RNFD_ECOLI/2-350 VFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQI---------..--------------------------LLASVSALLAEALVLKLRKQSVAATLKDNS----ALL----TGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMT---SWLP------PHEIAVNiPGFIDAIQVIFSGHTAS--------G--------------------------GDMNTLRLG----------------------IDGISQATP------LDTFKTSVRAG---HSVEQIMQYPIYSG-.ILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETL--------.---AAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFG-GYPDGVAFAVLLANI-------TVPLIDYYTRPRVYGHR
RNFD_HAEIN/1-353 MFKMVSSPHTHSGKLTAHIMLWAILAMMPAFFTQIYYFGFGVVLQS---------..--------------------------ALAIGTAIIAEFIAIKLRGKKPLNYLSDFS----VAL----TALILAMAIPPYAPYWIIIIGTLCAVLLGKQVYGGLGQNPFNPAMIGYVILLISFPLQMT---TWMP------PINLLQEpPTFSDAFSLIFSGLTTD--------G--------------------------FTLSQLTHN----------------------IDGITQATP------LDSAKIFYKSHTQLNDFYELIKLPIFMGNgTDFAQGWWQINVAFLAGGIFLILKRVIHWQIPVAMLVTF-FCLATATAFTGFTH--------.---LSAISQLVSGAMMFGAFFIATDPVTASITPRGKIIFGALVGLFVYLIRYHG-NYPDGVAFAILLSNI-------CVPLIDHYTRPRVSGYP
RNFD_RHOCA/1-348 MHMPVAGPHTHTLFTVSRTMLTVVAALTPATLFGLWEFGWPAIFLF---------..--------------------------LTTVVSAWVFEVACLKIADKPIRPFATDGS----AIL----SGWLVAMTLPPYAPWWVGVIGSFIAIVIAKHLFGGLGQNLFNPAMVARAMLVVALPVQMT---TWIA------PVGLLEG.PSFLHGLSITFLGSQEFD--------------------------------AVSSASTLSH-----------------------IKSQISAG--------ATMGEILPT--------LADLESRLLGF.-VPGSLGETSTVLLALGGLLLLVTRIITPTIPLAVLGTLVTLSAICSFLAPDRF--------.---APPILHLTSGSTMLCAFFIATDYVTSPVTTAGKWVYGIGIGTLVFVIPLRR--LPRGRGLCGALDELGHAPDRNLHPAADLRTVPHRQAAC