EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03116 alignment
(8 sequences with 1470 bp)


NQRB_HAEIN/38-405 GGTACGGTAACGCACAAAAACACTCACGTTCGTGATGCGTTAGATTCAAAACGTATGATGATTACGGTTTTCCTTGCGTTGTTCCCTGCGATTTTCTATGGGATGTACAATGTGGGTAACCAAGCGATTCCAGCGTTAAATCAATTAGGCAATTTAGATCAACTA......---ATTGCTAACGATTGGCACTATGCTCTTGCAAGTTCATTAGGTTTAGATTTAACTGCCAATGCAACTTGGGGCTCTAAAATGGCTCTTGGAGCAATTTTCTTTTTACCAATTTACTTAGTGGTATTTACCGTTTGTACTATTTGGGAATTGTTATTCTCTGTGGTTCGTGGTCACGAAGTAAATGAAGGAATGTTCGTTTCAACCATTTTATTTGCCTTGATCGTTCCACCAACATTGCCACTATGGCAAGCCGCATTAGGTATTACTTTTGGTATCATTGTTGCAAAAGAAATTTTTGGTGGCGTAGGTCGTAACTTTATGAACCCTGCACTTGCTGGTCGTGCGTTCTTATTCTTCGCATATCCAGCTCAAATTTCAGGCGATACGGTTTGGACTGCC---------------------------------------...---------------------GCAGATGGTTTCTCTGGTGCAACCGCACTT------------------------------------------------------------------------------------------------------------------TCACAGTGGTCACAA---------------------------------------------------------------------------GGTGGTCAAGGT------------------------------GCATTGCAACATACCGTAACAGGGGCT------------------------CCAATTACTTGGATGGATGCTTTTGTTGGTAAC...---TTACCTGGTTCAATGGGGGAAGTTTCTACCCTTGCAATTTTAATTGGCGGTGCTGTTATTGTATTCACTCGCATTGCAGCTTGGCGCATTATTGCTGGTGTGATGATTGGCATGATTGCAACCTCAACCTTGTTTAACCTAATTGGCTCAGAGACTAAC---------------------CCT...ATGTTCTCAATGCCTTGGCATTGGCACTTTGTTTTAGGTGGATTTGCATTGGGTATGGTATTTATGGCGACCGATCCTGTTTCAGCATCTTTTACTAATACTGGTAAATGGTGGTACGGTGCATTAATTGGCGTAATGGCTGTATTAATTCGTACTGTAAACCCAGCCTATCCAGAAGGAATGATGTTAGCGATTTTATTTGCAAACTTA---------------------TTTGCACCGATTTTCGACTACATCGTTGTTCAAGCAAATATCAAACGTCGG
NQRB_VIBAL/37-407 GGTATCGTAACAAATAAAAGCTCGCACGTTCGTGATAGTGTTGACCTAAAACGTATCATGATCATGGTTTGGTTTGCGGTATTCCCAGCAATGTTCTGGGGTATGTACAACGCAGGTGGCCAAGCTATTGCAGCGCTTAACCACATGTACGCTGGTGATCAACTAgcgacaGTTATCTCTGGTAACTGGCACTACTGGCTAACTGAAATGCTGGGCGGAACGATTGCCGCTGATGCAGGGGTTGGCAGTAAGATGCTACTAGGTGCGACCTACTTCCTACCTATCTACGCAACAGTATTCCTTGTTGGTGGTTTCTGGGAAGTGCTTTTCTGTATGGTGCGTAAGCACGAAGTAAACGAAGGCTTCTTTGTTACTTCTATCTTGTTCGCACTTATCGTTCCACCAACGCTACCTCTATGGCAAGCGGCACTAGGTATCACATTTGGTGTTGTTGTTGCGAAGGAGATCTTCGGTGGTACAGGTCGTAACTTCCTTAACCCTGCACTTGCAGGTCGTGCATTCCTATTCTTCGCTTACCCAGCGCAAATCTCGGGTGACGTAGTATGGACTGCA---------------------------------------...---------------------GCTGACGGCTTCTCTGGTGCAACTGCTCTT------------------------------------------------------------------------------------------------------------------AGCCAATGGGCTCAA---------------------------------------------------------------------------GGTGGTAACGGT------------------------------GCTCTAGTTAACACAGTAACTGGTTCT------------------------CCTATCACTTGGATGGACGCTTTCATCGGTAAC...---ATCCCTGGCTCTATTGGTGAAGTATCGACTCTAGCTCTAATGATCGGTGCAGCGATGATCGTTTACATGCGAATCGCTTCATGGCGCATCATTGCGGGCGTAATGATCGGTATGATTGCAGTATCGACTCTGTTTAACGTGATCGGTTCTGACACTAAC---------------------CCA...ATGTTCAACATGCCATGGCACTGGCACCTAGTTCTAGGTGGTTTTGCATTCGGTATGTTCTTCATGGCAACGGACCCAGTATCAGCGTCATTTACTAACAAAGGTAAATGGTGGTACGGCATCCTGATTGGTGCAATGTGTGTGATGATCCGTGTAGTTAACCCGGCGTACCCAGAAGGTATGATGCTGGCGATTCTATTCGCGAACCTA---------------------TTCGCACCTCTGTTCGACCATGTAGTGATTGAGAAGAACATCAAGCGGAGA
NQRB_CHLTR/36-502 CTACACACCCCATCTTCTCCACCGTTCGTTAGAGATGCTGTTGACGTCAAGCGTTGGATGATGTTGGTTGTAATTGCGCTCATGCCAACGATCTTTGCAGCCGTCTGGAATTCGGGTCTACAAGCTCTGGTCTATCAA------------TCCTCTGATCCACGA......ATCATGGAGGCATTCTTACACATATCTGGATTTAAGAGCTATTTTTCATTCGTTTCACAAGAGATCGGTATAGGATCCGTCCTTTTTGCTGGATGCAAAATTTTTCTCCCTCTCCTCTTCATTAGCTATGCTGTAGGAGGAACTTGCGAAGTTCTTTTTGCTATTATTCGTAAGCATAAAATAGCAGAAGGACTGTTAGTAACAGGAATGCTTTACCCGCTAATCCTTCCTCCTACTATTCCTTATTGGATGGCTGCCCTTGGCATTGCTTTTGGAGTAGTTATGGGGAAAGAACTTTTTGGCGGCACAGGAATGAATATTCTCAACCCAGCCTTAACAGGACGAGCTTTTCTATTCTTTACATTCCCTGCTAAAATGAGTGGAGAC---GTTTGGGTTGGCAGTAACCCTAGCAGAATTAAAGAAAGCCTTGCAACGATGagcTCTTTGGCAGAGAAGAGCCATTTCGATGGATTTTCTCAATCCACTTGTTTACAAGTTCTGAATTCGACTCCTCCATCCGTCAAACGTGTTCACATCGATGCCATAGCCTCTAATATCTTAAATCTTGAACATGTTCCTACCCAAGATGTTCTCCAGACTCAATTTGCGACATGGGCAGAATCTTATCCAGGTTTAACAGTAGATCAACTTTCCTTAGAACAACTTCAAAATTTTGTAACTACTCCGATAACCGAAGGAGGTTTAGGGCTTCTTCCTGCACACTTTGATTCTGCCTGTTCCCTTACTGAGGCTGTTTATGGTATCGGA---------------------AAATTTTCTACAGGAAACCTATTCTTTGGAAAT...---ATTCTAGGATCTTTGGGAGAGACTTCAACTGTAGCGTGCTTACTAGGTGCGGGGCTTCTTTTGTTAACAGGAATCGCTTCTTGGCGAACTATGCTATCTTTTGGTCTAAGTGCTTTTTTCTTTGCATGGTTCTTTAAAATCATGAGCATCTTAACAACCGGGAATGCTGGTGCTTGGGCTCCTgcaAAGTTCTTTATTCCTGCCTATCGCCATCTTTGTATTGGAGGCTTAGCATTCGGGCTAGTATTTATGGCTACCGATCCAGTTTCTTCCCCTGCAATGAAGCTTGCAAAATGGCTGTATGGCGCTTTTATAGGATTTCTAACAATTCTCATACGTTTAATCAATCCTGCATACCCTGAAGGAGTTATGTTAGCCATCCTATTAGGGAACGTG---------------------TTTGCTCCATTATTTGATAACATCGCTCTTAAGCAATACAGACAACGGAGA
NQRB_CHLPN/36-502 ATTGAAACCCCTTCCAAGCCTCCTTTCATCCGCGATTCTGTAGATGTTAAGCGTTGGATGATGCTTGTTGTTATCGCTTTGTTTCCCGCGACCTTTGTTGCGATCTGGAATTCAGGACTTCAATCTATCGTTTATAGC------------TCAGGCAATCCTGTG......CTGATGGAGCAATTCTTACATATTTCTGGATTTGGTAGTTATTTATCCTTTGTTTACAAAGAGATCCATATAGTTCCTATCCTTTGGGAAGGACTTAAGATCTTTATTCCTCTACTTACGATTAGCTATGTTGTCGGGGGTACTTGTGAGGTCCTATTTGCTGTAGTTCGTGGGCATAAAATCGCAGAAGGACTGCTAGTAACCGGAATCCTCTATCCCCTTACTCTCCCTCCGACAATTCCTTACTGGATGGCAGCCTTAGGGATCGCCTTTGGTATTGTTGTCAGTAAAGAGCTCTTCGGAGGCACAGGGATGAACATCCTCAATCCTGCTCTATCAGGAAGGGCATTCTTATTTTTTACGTTTCCAGCAAAGATGAGTGGTGAC---GTTTGGGTAGGAAGCAACCCCGGAGTGATTAAAGATAGCCTCATGAAGATGaacTCCTCGACAGGAAAAGTACTCATTGATGGATTTTCACAGTCTACCTGCCTACAAACTCTAAATTCGACACCTCCCTCTGTAAAGCGTCTGCATGTCGATGCGATTGCTGCAAATATGCTTCACATTCCTCACGTCCCTACTCAAGATGTCATTCACTCACAATTTTCTCTTTGGACAGAGACGCATCCTGGTTGGGTTTTAGATAATCTCACTCTTACACAACTTCAAACGTTTGTTACAGCTCCTGTTGCTGAGGGAGGATTGGGGCTGCTTCCCACACAGTTCGATTCTGCCTATGCTATTACCGATGTGATCTATGGGATTGGG---------------------AAGTTCTCAGCTGGGAATCTCTTTTGGGGAAAC...---ATTATAGGTTCTCTGGGGGAGACCTCCACTTTCGCCTGTCTGTTGGGTGCAATATTCCTTATTGTTACAGGCATTGCCTCTTGGAGAACCATGGCAGCCTTTGGGATAGGAGCCTTTCTCACAGGCTGGCTCTTTAAGTTTATCAGCGTACTCATCGTGGGACAAAACGGAGCTTGGGCACCTgctCGATTCTTCATTCCCGCCTATCGGCAGCTTTTCCTCGGAGGACTTGCTTTTGGTTTAGTCTTTATGGCTACGGATCCCGTATCATCGCCGACTATGAAATTAGGGAAATGGATTTACGGATTCTTTATAGGATTTATGACTATTGTGATTCGTCTTATCAATCCTGCGTATCCTGAGGGAGTGATGTTAGCGATCCTTCTGGGCAATGTA---------------------TTTGCCCCTCTTATCGACTATTTTGCTGTTAGAAAGTATAGAAAAAGGGGA
Q9WY87_THEMA/2-316 AAGCTGATAAGCGCTTACGCTCCACACCTTCGAGAAGAGGATGATGTGAGAAAGATCATGCTGGATGTGCTCATAGCCCTATCACCAGCGGTTATTGGGGCGGCTTATTTCTTCGGATGGTATGCTCTATTTCTCTGT---------------------------......------------------------------------------------------------------------------ATCGCAGGAGCGGTGATAGGTGAGCTGTTCGATATATTCGTCATGAGATACCTGAGAGGA---GTGAAGGATTTCGTCCCGGATGGCAGC------------GGGGCAGTG------------ACAGGACTGCTTCTGGCGATGAACGTGAGCACAAGGCTTCCTTTCTGGGCTTTTTTGTTGGGACTCGTTTTCGCTCTGGGGATCGGGAAACACGTGTTCGGAGGACTCGGCCAGAACATTTTCAACCCTGCGCTCGTCGGAAGAGCGTTTCTGCTCATTTCTTTTCCCACTTACATGACC---------ACCTGGGTTGTA------------------------------CCC------...---------------------GGGGCAGGATTCTGGAAATCTCCAGCGGAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGGTAACGGCAGCAACTCCT------------------CTTGCACTTTTCAAGGAACACGGTGTTTTCACA------------------------CCCTATTGGGAT---CTGTTCATAGGTAAG...---GTTGGAGGATCCTTAGGTGAAACGAGTGCACTTCTTCTCATAATTGGTTTCATCTATCTTCTCTTGAGAAAGAGAGTGAAGATATTCATTCCTGTCTCCTATATAGGAACTGTTCTTGTGTTTTCTTCGATAGCTTATTTGATGAATCCAAGGTACGGT------------------------...------------GATCCTCTCTTTCACCTCCTCAGTGGTGGTCTCATGCTCGGTGCACTTTTCATGGCCACCGATATGGTGACGAGTCCCATCACCGCGAAGGGACAGGTGATCTTCGGGATTGGATGTGGCGTTCTCACGATGGCTATAAGACTCTTTGGA---GCGTATCCTGAAGGCGTTTCATTTTCGATCCTTTTCATGAATGCA---------------------CTGGTTCCCCTGATAGACAGGTACACCAGACCGCGCATCTTCGGTGAGGTG
RNFD_ECOLI/2-350 GTATTCAGAATAGCTAGCTCCCCTTATACCCATAACCAGCGCCAGACATCGCGCATTATGCTGTTGGTGTTGCTCGCAGCCGTGCCAGGAATCGCAGCGCAACTGTGGTTTTTTGGTTGGGGTACTCTCGTTCAGATC---------------------------......------------------------------------------------------------------------------CTGTTGGCATCGGTTAGTGCTCTGTTAGCCGAAGCTCTCGTACTCAAACTACGCAAGCAGTCGGTAGCCGCAACGTTGAAAGATAACTCA------------GCATTGCTG------------ACAGGCTTATTGCTGGCGGTAAGTATTCCCCCCCTCGCGCCATGGTGGATGGTCGTGCTGGGTACGGTGTTTGCGGTGATCATCGCTAAACAGTTGTATGGCGGTCTGGGACAAAACCCGTTTAATCCGGCAATGATTGGTTATGTGGTCTTACTGATCTCCTTCCCCGTGCAGATGACC---------AGCTGGTTACCG------------------CCACATGAAATTGCGGTCAACatcCCTGGTTTTATCGACGCCATCCAGGTTATTTTTAGCGGTCATACCGCCAGT------------------------GGT------------------------------------------------------------------------------GGTGATATGAACACACTACGCTTAGGT------------------------------------------------------------------ATTGATGGCATTAGTCAGGCGACACCG------------------CTGGATACATTTAAAACCTCTGTCCGTGCCGGT---------CATTCGGTTGAACAGATTATGCAATATCCGATCTACAGCGGT---...ATTCTGGCGGGCGCTGGTTGGCAATGGGTAAATCTCGCCTGGCTGGCTGGCGGCGTATGGTTGCTATGGCAGAAAGCGATTCGCTGGCATATTCCCCTCAGCTTCTTAGTAACGCTGGCGTTATGCGCAATGTTGGGCTGGTTGTTCTCACCAGAAACACTG------------------------...---------GCAGCACCGCAAATTCATCTGCTGTCTGGAGCGACCATGCTCGGCGCATTCTTTATTTTGACTGACCCGGTTACCGCTTCTACGACCAATCGTGGTCGTCTTATTTTCGGCGCGCTTGCGGGCTTATTAGTCTGGTTGATCCGCAGTTTCGGC---GGCTATCCTGACGGCGTGGCTTTTGCCGTCCTGCTGGCGAACATC---------------------ACGGTTCCTCTGATCGATTACTACACGCGTCCGCGCGTCTACGGCCATCGC
RNFD_HAEIN/1-353 ATGTTTAAAATGGTTAGCTCCCCACATACTCATTCAGGAAAACTCACAGCGCATATTATGCTTTGGGCCATTTTGGCAATGATGCCCGCTTTTTTCACGCAAATTTATTATTTTGGATTTGGCGTGGTGCTTCAATCC---------------------------......------------------------------------------------------------------------------GCATTAGCCATTGGTACGGCAATCATTGCGGAATTTATTGCAATAAAATTACGAGGTAAAAAACCGCTCAATTATCTTTCAGATTTCAGC------------GTAGCCCTG------------ACTGCGTTAATTTTGGCAATGGCTATTCCACCTTATGCACCTTATTGGATTATCATCATTGGAACACTCTGTGCAGTTTTATTAGGTAAACAGGTTTATGGGGGGTTAGGGCAAAATCCATTCAATCCCGCGATGATTGGCTATGTAATTCTTCTAATTTCATTCCCATTACAAATGACA---------ACTTGGATGCCA------------------CCAATTAATTTATTACAGGAAccaCCGACTTTTTCAGATGCATTTTCATTAATATTTTCAGGTTTAACCACTGAT------------------------GGA------------------------------------------------------------------------------TTTACGCTTTCACAACTTACGCATAAC------------------------------------------------------------------ATTGATGGTATCACCCAAGCAACGCCT------------------TTGGATAGTGCAAAAATTTTCTATAAAAGTCACACTCAATTAAATGATTTTTATGAGCTAATTAAACTACCTATATTTATGGGTAATggaACTGATTTCGCTCAAGGATGGTGGCAAATCAACGTGGCTTTCTTAGCGGGCGGAATTTTCCTTATTTTAAAACGTGTCATTCACTGGCAAATTCCAGTGGCGATGCTTGTCACCTTT---TTCTGTTTAGCCACTGCGACCGCTTTTACTGGCTTCACGCAT------------------------...---------TTAAGTGCGATTAGCCAACTCGTTAGTGGCGCAATGATGTTTGGTGCATTTTTTATTGCAACAGATCCTGTCACAGCCTCCATTACACCACGCGGAAAAATTATTTTTGGCGCATTAGTGGGGTTATTTGTTTATCTCATTCGTTATCACGGA---AATTATCCAGACGGCGTGGCATTCGCCATTTTATTAAGTAATATT---------------------TGCGTCCCACTTATCGATCATTACACACGTCCGCGCGTATCTGGTTATCCA
RNFD_RHOCA/1-348 ATGCACATGCCCGTTGCGGGCCCGCACACCCACACGCTGTTCACCGTTTCCCGCACGATGCTGACGGTGGTGGCGGCGCTGACGCCCGCCACCCTGTTCGGGCTGTGGGAATTCGGCTGGCCCGCGATTTTCCTGTTC---------------------------......------------------------------------------------------------------------------CTGACCACGGTCGTCTCGGCCTGGGTCTTCGAGGTCGCCTGCCTGAAGATCGCGGACAAGCCGATCCGGCCCTTTGCCACCGACGGCTCG------------GCGATCCTG------------TCGGGCTGGCTTGTCGCGATGACGCTGCCGCCCTATGCGCCCTGGTGGGTCGGCGTGATCGGGTCCTTCATCGCCATCGTCATCGCGAAACACCTGTTCGGCGGGCTGGGGCAGAACCTGTTCAACCCGGCGATGGTCGCCCGCGCCATGCTCGTCGTCGCGCTGCCGGTGCAGATGACC---------ACCTGGATCGCG------------------CCGGTCGGCCTGCTGGAGGGC...CCCTCCTTCCTGCACGGGCTGTCGATCACTTTCCTTGGTTCGCAGGAGTTCGAC------------------------------------------------------------------------------------------------GCCGTCTCCTCCGCCTCGACGCTGAGCCAC---------------------------------------------------------------------ATCAAGAGCCAGATCAGCGCGGGC------------------------GCGACGATGGGCGAGATCCTCCCGACG------------------------CTGGCGGATCTGGAAAGCCGTCTTCTGGGCTTC...---GTGCCCGGCAGCCTGGGCGAGACCTCGACCGTGCTTCTGGCACTGGGCGGGCTTTTGCTGCTGGTCACAAGGATCATCACACCGACGATCCCGCTGGCCGTGCTGGGCACGCTGGTCACGCTGTCGGCGATCTGCTCCTTCCTTGCGCCGGACCGCTTC------------------------...---------GCCCCGCCGATCCTGCATCTGACCTCGGGCTCGACGATGCTCTGCGCCTTCTTCATCGCCACCGATTACGTCACCTCGCCGGTCACCACCGCAGGCAAATGGGTCTATGGCATCGGCATCGGCACGCTGGTCTTCGTGATCCCACTTCGGCGC------CTTCCCCGAGGGCGTGGCCTTTGCGGTGCTCTTGATGAACTCGGTCACGCCCCTGATCGAAACCTACATCCGGCCGCGGATCTTCGGACGGTCCCGCACCGGCAAGCCGCTTGC