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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF03006 phylogeny
for nucleotide alignment


 
((((((((((((((((((((Q97KH2_CLOAB/7-204,((Q8XJ46_CLOPE/8-206,(Y117_BORBU/19-223,(((Q81JK3_BACAN/2-207,Q8ENR7_OCEIH/1-199),Q8XKC6_CLOPE/3-207),Q97KN5_CLOAB/2-206))),Q897Y4_CLOTE/7-204)),Q86A98_DICDI/25-265),(Q8EP52_OCEIH/7-204,Q9K8Y7_BACHD/7-204)),((HLY3_BACSU/2-199,Q81R18_BACAN/13-207),(((Q834G8_ENTFA/13-213,Q9CI69_LACLA/10-209),Q88SU4_LACPL/11-208),Q8Y636_LISMO/6-203))),(Q8CNG7_STAEP/22-220,(Q8DP73_STRR6/11-208,(Q8DZ03_STRA5/9-206,(Q8DUI8_STRMU/13-210,Q99ZM9_STRPY/11-208))))),Q8A6A2_BACTN/19-222),Y1037_TREPA/31-231),Q8EED5_SHEON/12-209),((YQFA_SHIFL/11-209,(Q8DDE8_VIBVU/6-204,Q8ZHJ2_YERPE/28-226)),Q7QN05_ANOGA/5-201)),(((Q9JTB2_NEIMA/2-200,Q7NSS8_CHRVO/2-197),(Q87V64_PSESM/2-196,(Q88D42_PSEPK/2-197,Q9HUX7_PSEAE/2-197))),(Q87F02_XYLFT/9-206,Q8P6V5_XANCP/9-206))),((((Q8UGX9_AGRT5/21-218,Q92RA6_RHIME/10-207),Q98F58_RHILO/18-216),(Q89E35_BRAJA/25-222,Q8G382_BRUSU/13-208)),(Q8VL11_AZOBR/12-209,(Q8PEC5_XANCP/13-207,Q9A2R9_CAUCR/23-219)))),((Q7Q5Y4_ANOGA/36-235,Q9W3S5_DROME/81-297),(PAQRB_HUMAN/23-220,Q95XN9_CAEEL/374-575))),((Q7UGF9_RHOBA/10-203,Q9RT85_DEIRA/5-212),((((Q82I70_STRAW/25-226,Q82R23_STRAW/57-258),(Q8G5J6_BIFLO/58-260,Q8G6S8_BIFLO/14-217)),(Q8FMM4_COREF/46-251,Q9RHY4_CORAM/29-234)),Y1114_MYCBO/29-234))),Q8SV70_ENCCU/1-204),(((Q9U1V1_CAEEL/11-239,Q9VFG7_DROME/111-329),Q94276_CAEEL/62-279),(((((Q7S0E1_NEUCR/93-297,(ADRL_SCHPO/83-305,(Q03419_YEAST/75-300,PHO36_YEAST/84-307))),(YAJB_SCHPO/202-424,(Q07959_YEAST/252-529,Q7SGT2_NEUCR/247-469))),((Q7PQ98_ANOGA/76-297,(Q7ZY04_XENLA/135-358,ADR2_MOUSE/140-363)),(ADRL_CAEEL/195-416,Q9N536_CAEEL/305-526))),Q99393_YEAST/58-288),((Q93ZH9_ARATH/90-317,(O65564_ARATH/65-317,Q9C5R3_ARATH/56-314)),Q9SVF3_ARATH/73-370)))),(PAQR4_HUMAN/43-254,Q86D34_DROME/208-386)),(MPRG_MOUSE/43-269,MPRG_BRARE/44-286)),MPRA_PIG/68-292),(MPRB_PIG/70-297,(Q801G4_XENLA/70-296,Q801G3_BRARE/72-296))),MPRA_CYNNE/70-296,MPRA_BRARE/70-298);
((((((((((((((((((((Q97KH2_CLOAB/7-204:0.23915,((Q8XJ46_CLOPE/8-206:0.28259,(Y117_BORBU/19-223:0.45954,(((Q81JK3_BACAN/2-207:0.30931,Q8ENR7_OCEIH/1-199:0.30119):0.06736,Q8XKC6_CLOPE/3-207:0.31203):0.07474,Q97KN5_CLOAB/2-206:0.28574):0.08923):0.13230):0.05174,Q897Y4_CLOTE/7-204:0.20140):0.05147):0.06471,Q86A98_DICDI/25-265:0.41200):0.05333,(Q8EP52_OCEIH/7-204:0.27293,Q9K8Y7_BACHD/7-204:0.30669):0.14042):0.05988,((HLY3_BACSU/2-199:0.31298,Q81R18_BACAN/13-207:0.21743):0.05744,(((Q834G8_ENTFA/13-213:0.28405,Q9CI69_LACLA/10-209:0.33244):0.07087,Q88SU4_LACPL/11-208:0.33919):0.18229,Q8Y636_LISMO/6-203:0.33525):0.09177):0.04668):0.03033,(Q8CNG7_STAEP/22-220:0.24916,(Q8DP73_STRR6/11-208:0.23701,(Q8DZ03_STRA5/9-206:0.23043,(Q8DUI8_STRMU/13-210:0.11300,Q99ZM9_STRPY/11-208:0.19196):0.03148):0.04650):0.12002):0.47831):0.17283,Q8A6A2_BACTN/19-222:0.54995):0.07709,Y1037_TREPA/31-231:0.37047):0.10194,Q8EED5_SHEON/12-209:0.38108):0.12988,((YQFA_SHIFL/11-209:0.15549,(Q8DDE8_VIBVU/6-204:0.31199,Q8ZHJ2_YERPE/28-226:0.20062):0.05700):0.09284,Q7QN05_ANOGA/5-201:0.22296):0.09930):0.09855,(((Q9JTB2_NEIMA/2-200:0.41596,Q7NSS8_CHRVO/2-197:0.12901):0.05969,(Q87V64_PSESM/2-196:0.15823,(Q88D42_PSEPK/2-197:0.11321,Q9HUX7_PSEAE/2-197:0.11982):0.05106):0.12138):0.12012,(Q87F02_XYLFT/9-206:0.30013,Q8P6V5_XANCP/9-206:0.13856):0.22282):0.04762):0.12441,((((Q8UGX9_AGRT5/21-218:0.22286,Q92RA6_RHIME/10-207:0.21441):0.11303,Q98F58_RHILO/18-216:0.22021):0.06637,(Q89E35_BRAJA/25-222:0.19098,Q8G382_BRUSU/13-208:0.30858):0.06272):0.14992,(Q8VL11_AZOBR/12-209:0.31247,(Q8PEC5_XANCP/13-207:0.28790,Q9A2R9_CAUCR/23-219:0.24887):0.14227):0.04721):0.10953):0.01798,((Q7Q5Y4_ANOGA/36-235:0.23908,Q9W3S5_DROME/81-297:0.26607):0.10689,(PAQRB_HUMAN/23-220:0.50759,Q95XN9_CAEEL/374-575:0.43350):0.09681):0.31952):0.11376,((Q7UGF9_RHOBA/10-203:0.68451,Q9RT85_DEIRA/5-212:0.30500):0.12754,((((Q82I70_STRAW/25-226:0.18485,Q82R23_STRAW/57-258:0.15421):0.14873,(Q8G5J6_BIFLO/58-260:0.29972,Q8G6S8_BIFLO/14-217:0.39430):0.14718):0.10072,(Q8FMM4_COREF/46-251:0.19650,Q9RHY4_CORAM/29-234:0.29659):0.27515):0.03407,Y1114_MYCBO/29-234:0.36154):0.10352):0.08890):0.09138,Q8SV70_ENCCU/1-204:0.75914):0.34320,(((Q9U1V1_CAEEL/11-239:0.66907,Q9VFG7_DROME/111-329:0.36688):0.11922,Q94276_CAEEL/62-279:0.88894):0.08760,(((((Q7S0E1_NEUCR/93-297:0.39715,(ADRL_SCHPO/83-305:0.45906,(Q03419_YEAST/75-300:0.38435,PHO36_YEAST/84-307:0.35104):0.15450):0.03914):0.10813,(YAJB_SCHPO/202-424:0.42717,(Q07959_YEAST/252-529:0.64942,Q7SGT2_NEUCR/247-469:0.41789):0.07892):0.23787):0.04727,((Q7PQ98_ANOGA/76-297:0.30198,(Q7ZY04_XENLA/135-358:0.24390,ADR2_MOUSE/140-363:0.13794):0.17127):0.05949,(ADRL_CAEEL/195-416:0.20434,Q9N536_CAEEL/305-526:0.22546):0.14722):0.20259):0.03856,Q99393_YEAST/58-288:1.02844):0.09117,((Q93ZH9_ARATH/90-317:0.29231,(O65564_ARATH/65-317:0.17840,Q9C5R3_ARATH/56-314:0.11583):0.21531):0.07424,Q9SVF3_ARATH/73-370:0.36663):0.17269):0.14827):0.17839):0.09792,(PAQR4_HUMAN/43-254:0.45470,Q86D34_DROME/208-386:0.60309):0.15784):0.21561,(MPRG_MOUSE/43-269:0.19185,MPRG_BRARE/44-286:0.31626):0.31935):0.22382,MPRA_PIG/68-292:0.15381):0.04696,(MPRB_PIG/70-297:0.12476,(Q801G4_XENLA/70-296:0.24524,Q801G3_BRARE/72-296:0.30372):0.09164):0.12741):0.12029,MPRA_CYNNE/70-296:0.15008,MPRA_BRARE/70-298:0.18731);