EMBL-EBI
>
Goldman Group
PANDIT Home
|
Browse PANDIT
|
Help on PANDIT
|
Release notes
|
Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF02917 - Pertussis_S1)
Pertussis toxin, subunit 1
(
Pfam
reference: accession no.
PF02917
)
(
Interpro
reference: accession no.
IPR003898
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
2 sequences @ 239 aa
(ave. pairwise identity: 0.21)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 2.18)
nucleotides
(available for above)
2 sequences @ 717 bp
(ave. pairwise identity: 0.34)
New Hampshire format
(total tree length: 1.61)
amino acids, restricted set
(corresp. to available nt seqs)
2 sequences @ 239 aa
(ave. pairwise identity: 0.21)
New Hampshire format
(total tree length: 2.18)