EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF02885 alignment
(25 sequences with 240 bp)


YBIB_ECOLI/2-71 gacTATCGCAAAATCATTAAAGAGATCGGGCGCGGGaaaAACCACgcgCGCGATTTAGACCGGGATACTGCGCGCGGTCTGTATGCTCATATGCTCAATGGTGAAGTCCCTGAC........................CTTGAGTTGGGCGGCGTATTGATTGCGCTGCGTATCAAAGGAGAAGGG---...GAAGCAGAGATGCTCGGCTTTTACGAAGCCATGCAAAATCACACCATC
TRPG_ECOLI/198-263 acgCTGCAACCGATTCTGGAAAAACTGTATCAGGCG...------...CAGACGCTTAGCCAACAAGAAAGCCACCAGCTGTTTTCAGCGGTGGTGCGTGGCGAGCTGAAGCCG........................GAACAACTGGCGGCGGCGCTGGTGAGCATGAAAATTCGCGGTGAGCAC---...CCGAACGAGATCGCCGGGGCAGCAACCGCGCTACTGGAAAACGCAGCG
TRPD_VIBPA/1-65 atgGAAGCA---ATCATCAACAAACTGTACGAACAG...------...CAATCACTGACTCAAGAAGAAAGCCAACAGCTATTCGACATTATTATTCGCGGCGAGCTTGATCCA........................ATTTTAATGGCATCGGCATTAACAGCATTAAAGATCAAAGGCGAAACG---...CCTGATGAAATTGCCGGTGCAGCAAAAGCCCTACTGGCGAATGCGAAC
TRPD_HAEIN/2-67 caaCACAACCAATTATTAGAACAACTTTATAGCGGA...------...CATTCACTTTCAACCTCAGAAAGCACCGCTCTTTTTAATGCAGTCATCCAAGGTGAGCTTTCCAAT........................GAACAAATTGCTGCAATGCTTATTGCTTTAAAAGTGCGGGGAGCAAAT---...ACTGAGGAAATTTCGGGTGCCGTTGCCGCCTCATTACAAAATGCCAAA
TRPD_BUCAP/1-65 ...ATGCAAAATATTTTTAATAAAATTTATGAATCA...------...AAATCCTTAAATCAAGAGGAAAGCTATCAACTTTTTAAATCAATTGCATTAGGTAAAATCAATGAA........................ATACAATTATCATCTATTTTAACAGCAATGCAAATGCATGGTGAATCA---...GAAAAAGAAATATTAGGTGCAATATATGCATTTTCAGAAAGAATGAAA
TRPD_CORGL/5-70 gcaACACTGAAAGTTCTCAACGCCTACTTGGATAAC...------...CCCACTCCAACCCTGGAGGAGGCAATTGAGGTGTTCACCCCGCTGACCGTGGGTGAATACGATGAC........................GTGCACATCGCAGCGCTGCTTGCGACCATCCGTACTCGCGGTGAGCAG---...TTCGCTGATATTGCCGGCGCTGCCAAGGCATTCCTCGCGGCGGCTCGT
TRPD_MYCTU/26-91 tccTGGCCGCAGATTTTGGGGCGGTTGACCGACAAC...------...CGCGATCTGGCGCGGGGCCAGGCTGCCTGGGCCATGGACCAGATCATGACCGGCAATGCGCGGCCG........................GCGCAGATCGCCGCCTTCGCGGTGGCGATGACGATGAAGGCTCCGACC---...GCCGACGAAGTCGGTGAGCTCGCTGGCGTCATGCTCAGCCACGCGCAT
TRPD_HALVO/1-65 ...ATGCAGGATTATATCGAACGTGTGACCGGCGGT...------...GCGGACCTGACTGTCGAGGAGGCGCGCCGACCGCCGCGCGGGCGGTCTTCGGAGGACGCGACCGAG........................GCGCAAATCGGCGCGCTCCTCGCCGCGCTCCGGGCGAAAGGCGAGACC---...GAGGCCGAAATCGCGGGGTTCGCGCAGGGGATGCGCGACGCCGCCCTG
TRPD_LACCA/1-66 atgATTAAACAAGCCATTGAAAAAGTCGTGAACCAC...------...GAAAACCTAACGTTTGAAGAAACGGAAGCCGTTTTGGATGAAATCATGAACGGTGAAGCATCTGAG........................GTGCAAACTGCCAGCTTACTGACCGCGTTAACCGCCAAGAATCCAACG---...ATTGATGAAATCGCCGGTGCAGCTGCTTCTATGAGAAGCCACGCGCTT
TRPD_AZOBR/13-78 gacATGAAGGCGATCCTCGCCAAGGTCGCCGCCGGC...------...AACGCCCTGAACGAAGCGGAGGCCTCGCTGGCCTTCGACATCATCATGTCGGGCAACGCCACCCCG........................TCGCAGATGGGCGGCTTCCTGATGGCGCTGCGCGTGCGCGGCGAGACG---...GTGGACGAGATCACCGGGGCCGCCCGCGTCATGCGCGCCAAGGCGATC
TRPD_PSEAE/2-67 gatATCAAGGGAGCCCTCAATCGCATCGTCAACCAG...------...CTCGACCTGACCACCGAGGAAATGCAGGCGGTCATGCGCCAGATCATGACCGGGCAGTGCACCGAC........................GCGCAGATCGGCGCCTTCCTGATGGGCATGCGGATGAAGAGCGAAACC---...ATCGACGAGATCGTCGGCGCGGTGGCAGTGATGCGCGAACTGGCCGAC
TRPD_ACIAD/2-67 aatATTCAACAAGCATTAAACCATATCACCAAAAAT...------...ATTCATCTGACCCAAGCGCAAATGGAAGATGTGATGCGTAGCATCATGCAAGGCGAAGCCACTGAA........................GCACAAATTGGTGCGTTAATGATGGGTTTGCGCATGAAGGGTGAAAGT---...ATCGATGAAATTACCGCAGCCGCACGGGTTATGCGTGAGCTGGCGATT
TRPG_THEMA/249-314 gacATCGTTTCCGCTCTCAAGAAACTCGTAGAATTT...------...GAAGATCTCACTTTTGAAGAGAGCCGTCAGGTGATGAACTTCATCATGTCCGGGAATGCCACGGAC........................GCTCAAATTGCAGGTTTCCTTGTGGCACTCAGGATGAAAGAGGAAACG---...GGAGACGAACTCGGTGGAATGGCCAGCGTCATGCGAGAAAAATCGATT
TRPD_LACLA/1-65 atgAAAAATGAA---CTTGAAAAAGTGATGTCAGGT...------...CGTGACATGACCGAAAATGAAATGAATATGCTTGCTAATTCAATTATCCAAGGTGAATTAAGCGAG........................GTCCAAATTGCCAGCTTTTTAGTAGCATTAAAAATGAAAGGTGAAGCA---...GCAAGCGAATTGACTGGTTTGGCTCGAGCTTTACAAAAAGCAGCGATT
TRPD_SULSO/2-67 aatATAAATGAGATTCTTAAAAAACTCATAAATAAA...------...TCAGATTTAGAAATTAATGAGGCTGAAGAATTAGCTAAAGCTATAATTAGAGGAGAAGTTCCAGAG........................ATTTTAGTATCAGCAATTTTAGTAGCATTAAGAATGAAAGGTGAAAGT---...AAAAATGAAATAGTAGGTTTTGCTAGAGCAATGAGAGAATTAGCGATC
TRPD_ARATH/107-171 tctTTCAACCAGTTGATTGAAACCTTGATTGATCGG...------...GTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCTGAAT---GAGGCAAACGAG........................GCGCTGATCAGTGCCTTTCTAGTTCTTCTGAGAGCTAAAGGAGAGACA---...TACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGG
TRPD_METTM/2-67 aggTTTGAGGGGATAATGAATGATATAATGGACTTC...------...AGGAACCTCAGTGAGGATGAGGCCCACGATTTAATGGAGATGATAATGGATGGTGAAATGGGGGAT........................GTGCAGATCGCCGCATTACTCACAGCCCTTGCAATGAAGGGGGAGACC---...GTGGATGAGATCACAGGGTTTGCAAGGGCAATGAGGGAGAGGGCAGTG
TRPD_BACSU/1-65 ...ATGAACAGATTTCTACAATTGTGCGTTGACGGA...------...AAAACCCTTACTGCCGGTGAGGCTGAAACGCTGATGAATATGATGATGGCAGCGGAAATGACTCCT........................TCTGAAATGGGGGGGATATTGTCAATTCTTGCTCATCGGGGGGAGACG---...CCAGAAGAGCTTGCGGGTTTTGTGAAGGCAATGCGGGCACACGCTCTT
TRPD_BACPU/1-65 ...ATGAATCACCGACTATCAGCTCTTGTTAATGGA...------...GGCTTTCTATCAGAAAATGAAGCAAATAAACTCATGCATGATATGATGAGCGGCTTTTTAACAGAT........................GCTGAAGTCGCTGCTAGTCTCTCGATTTTAGCGCATAGAGGAGAAACC---...GCTGAAGAAATGACGGGTTTTGTGAAAGCTATGCGGCAAAATGCAGCA
TYPH_MYCPI/2-67 aatATTATAGAAATTATTGAATTAAAAAAAAATAAA...------...AAAAAATTGTCTCAAGATCAAATTAATTTTTGTATTTCAGGATTAGTAAACAAATCAATTCCAGAT........................TATCAAATTAGTGCATTGTTAATGGCTATATGATTTAACGGATTAGAT---...GATAATGAATTATATTTTTTAACAAAAGCAATGATTGATTCGGGAAAA
TYPH_MYCGE/2-67 aatATCATTAATTTAATTAATAAAAAACAACGCGGA...------...AAAGCTTTAAATTTAGCTGAAATCAATTGGTTTGTTAATGCTGTTTTAAACAAAACCATTGCTGAT........................TATCAAATTACTGCATTTTTGATGGCTATTTGGTTTAAAGGGATGAAC---...CCAAATGAACTTTTTTTATTAACAAAAGCAATGGTGGATACTGGTGAA
TYPH_ECOLI/3-68 ctcGCACAAGAAATTATTCGTAAAAAACGTGATGGT...------...CATGCGCTGAGCGATGAAGAAATTCGTTTCTTTATCAACGGTATTCGCGACAACACTATCTCCGAA........................GGGCAGATTGCCGCCCTCGCGATGACCATTTTCTTCCACGATATGACA---...ATGCCTGAGCGTGTCTCGCTGACCATGGCGATGCGAGATTCAGGAACC
PDP_BACSU/2-67 agaATGGTAGATATCATCATCAAAAAACAAAACGGA...------...AAAGAACTCACCACTGAAGAAATTCAATTTTTTGTGAACGGCTATACAGATGGAAGCATTCCTGAT........................TATCAGGCAAGCGCGCTTGCTATGGCGATTTTCTTCCAGGATATGAGT---...GACCGTGAACGCGCGGACTTGACGATGGCTATGGTGAACTCCGGTGAA
TYPH_HUMAN/35-100 cagCTCCCGGAGCTGATCCGCATGAAGCGAGACGGA...------...GGCCGCCTGAGCGAAGCGGACATCAGGGGCTTCGTGGCCGCTGTGGTGAATGGGAGCGCGCAGGGC........................GCACAGATCGGGGCCATGCTGATGGCCATCCGACTTCGGGGCATGGAT---...CTGGAGGAGACCTCGGTGCTGACCCAGGCCCTGGCTCAGTCGGGACAG
TRPD_YEAST/5-84 actTTGCTATCTTACACCAAGAAATTATTGGCTTCTccgCCGCAAttgAGTAGCACAGACCTACACGATGCGTTGCTGGTTATATTAAGTCTTTTGCAAAAATGTGATACAAATagcgatgagagtctttccatctatACCAAAGTTTCGAGTTTTCTCACGGCCTTGAGAGTTACTAAACTTGATCACaagGCTGAATACATTGCGGAAGCTGCAAAGGCTGTGCTCAGACATTCCGAC