EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF02830 - V4R)
V4R domain
(Pfam reference: accession no. PF02830)
(Interpro reference: accession no. IPR004096)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
53 sequences @ 76 aa
(ave. pairwise identity: 0.26)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 34.79)
nucleotides
(available for above)
53 sequences @ 228 bp
(ave. pairwise identity: 0.39)
New Hampshire format
(total tree length: 23.79)
amino acids, restricted set
(corresp. to available nt seqs)
53 sequences @ 76 aa
(ave. pairwise identity: 0.26)
New Hampshire format
(total tree length: 34.79)