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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF02627 phylogeny
for amino acid alignment


 
(((((((((((O53749_MYCTU/49-133,Q9CB37_MYCLE/51-135),((((Q82QS6_STRAW/57-140,Q8TN24_METAC/40-121),((Q7WNI3_BORBR/39-122,Q872E4_NEUCR/44-109),Q89SZ5_BRAJA/50-134)),((Q89RQ0_BRAJA/34-116,O53905_MYCTU/40-123),(Q89NA9_BRAJA/36-119,Q9A3V6_CAUCR/52-136))),(((Q7USN7_RHOBA/41-121,(((Q7P0I8_CHRVO/10-92,Q8FER3_ECOL6/13-95),((Q93HH4_STRAW/42-128,Q9RJG5_STRCO/31-117),(Q8FN71_COREF/14-100,Q8NN44_CORGL/15-100))),((((Q89CI6_BRAJA/13-94,Q98L97_RHILO/13-95),((Q8D7H9_VIBVU/12-94,P96684_BACSU/12-94),(((Q82A02_STRAW/34-115,((Q7WN29_BORBR/12-94,Q89PR3_BRAJA/12-94),Q9KZB2_STRCO/10-92)),Q9KZB1_STRCO/28-109),Q82HT0_STRAW/32-114))),(((((Q92XD0_RHIME/12-93,Q987X0_RHILO/12-95),Q89D50_BRAJA/12-94),Q7WHA8_BORBR/12-94),(((Q8UI08_AGRT5/12-94,Q92S80_RHIME/12-94),Q89M11_BRAJA/16-98),Q98K47_RHILO/12-94)),((Q7NXV7_CHRVO/15-94,Q840R0_9GAMM/10-95),(Q7NMU5_GLOVI/47-129,Q9I6M1_PSEAE/12-94)))),(Q7VW83_BORPE/12-94,((Q82PT4_STRAW/14-96,Q9FC57_STRCO/14-95),Q9RDI4_STRCO/14-96))))),(Q7NI16_GLOVI/40-125,Q8NUW4_STAAW/10-92)),Q82MM5_STRAW/103-186))),Q89CP9_BRAJA/40-125),(((Q89F01_BRAJA/58-143,(Q8FN18_COREF/270-361,Q8NMX8_CORGL/269-355)),((Q89XS3_BRAJA/55-139,Q8UJP9_AGRT5/55-127),Q881R7_PSESM/57-141)),(Q8GMC9_STRGL/56-141,Q9RTJ7_DEIRA/77-160))),((((Q984R0_RHILO/14-98,Q98BX3_RHILO/57-141),(Q89IL8_BRAJA/43-126,(Q8YLD1_ANASP/42-125,(Q8UDR5_AGRT5/44-127,Q98JY9_RHILO/46-129)))),(((Q7VTI6_BORPE/91-170,Q8XYW1_RALSO/93-173),(Q83BM5_COXBU/96-175,((Q8FVW4_BRUSU/94-170,Q9ANL0_BRAJA/95-178),(Q9A268_CAUCR/95-178,((Q82IC5_STRAW/94-177,Q9X5V1_STRVD/94-172),AHPD_MYCTU/93-176))))),((((Q8PT04_METMA/24-107,Q8TNJ6_METAC/14-97),((Q8PZ63_METMA/30-113,Q8PZX1_METMA/20-103),Q9WYF2_THEMA/12-95)),(((O26169_METTH/26-109,(O29899_ARCFU/36-119,Q8PYE4_METMA/43-127)),(Q8Q0J3_METMA/14-97,(Q8UGQ2_AGRT5/19-101,Q8Y972_LISMO/15-97))),(((YCO4_PARDE/21-104,((Q8EMR2_OCEIH/26-109,Q8EMR2_OCEIH/135-218),((Q54401_STRLA/19-103,Q89N13_BRAJA/21-105),Q8NLN6_CORGL/20-105))),((((Q8DKG6_SYNEL/35-118,((Q89I69_BRAJA/24-107,Q7P1X7_CHRVO/26-109),Q8GQ78_PSEAE/24-107)),(O06800_MYCTU/26-109,YAC7_ALCEU/24-107)),(((Q88K69_PSEPK/28-111,Q7WQ74_BORBR/23-106),Q87XC8_PSESM/23-106),(Y1053_HAEIN/24-107,(Q9I5X1_PSEAE/24-106,Q9JTG8_NEIMA/24-106)))),(Q8PYL6_METMA/19-102,Q8RCV6_THETN/21-104))),((O27018_METTH/13-96,(Q8PUU3_METMA/18-101,Q8PYV8_METMA/9-92)),(((Q978P3_THEVO/22-105,Q9HLI4_THEAC/22-105),(Q81CE2_BACCR/28-111,(O32166_BACSU/32-115,Q9K796_BACHD/28-111))),(Q8PZJ3_METMA/27-110,(Q8PBZ0_XANCP/31-114,Q9X1V5_THEMA/22-105))))))),((Q7UPD1_RHOBA/39-122,((((Q7VG63_HELHP/82-166,(Q8A7Y1_BACTN/178-261,Q8TTM1_METAC/27-111)),(Q87FG9_VIBPA/24-106,(Q9RVP9_DEIRA/30-114,(((Q8FQN1_COREF/33-119,(Q8A7Y1_BACTN/311-396,(Q7VG63_HELHP/216-301,Q8RN34_CAMJE/39-124))),(Q8A8P6_BACTN/142-227,(Q87FG9_VIBPA/158-243,Q9PCL2_XYLFA/167-252))),(((Q930M4_RHIME/170-255,(P71826_MYCTU/26-111,Q8UH27_AGRT5/28-112)),((((Q7WPY0_BORBR/32-117,Q8CL33_YERPE/30-114),((((Q930A6_RHIME/41-125,(Q89LE4_BRAJA/50-134,Q8Y1Q8_RALSO/21-105)),(Q881M4_PSESM/43-127,Q8Y1Q8_RALSO/150-234)),((Q89LE4_BRAJA/177-261,Q881M4_PSESM/170-254),Q930A6_RHIME/168-252)),(Q7NSY1_CHRVO/13-97,Q8XQ14_RALSO/17-101))),(Q81RU7_BACAN/19-103,((((Q88TS1_LACPL/17-102,Q8EWL7_MYCPE/18-103),Q9CFE3_LACLA/16-101),(Q8DV36_STRMU/17-102,Q8NRJ9_CORGL/17-103)),Q8E1D2_STRA5/17-102))),(Q9KXX7_STRCO/38-123,((Q87WR5_PSESM/34-118,(((Q88GS0_PSEPK/34-118,(Q7WNR4_BORBR/34-118,((Q7WPN1_BORBR/34-118,(Q8D1N8_YERPE/49-133,(Q8UK98_AGRT5/34-118,Q97UW0_SULSO/43-128))),Q89UN1_BRAJA/34-118))),(Q8KL13_RHIET/51-135,Q8KL33_RHIET/67-151)),(Q7WNG4_BORBR/34-118,Q7W0B6_BORPE/40-124))),(((O67982_RHOOP/297-381,Q8FN50_COREF/40-124),(DC4C_ACIAD/35-119,(((Q89IH0_BRAJA/35-120,Q9A5N6_CAUCR/302-387),((Q88N35_PSEPK/35-119,Q8PDG7_XANCP/35-119),Q8XX67_RALSO/35-119)),(O86608_STRCO/355-439,Q82MF4_STRAW/285-369)))),((((Q9L5A7_9PROT/34-118,Q9L5B1_9RHOB/33-117),Q9KX42_9RHIZ/39-123),Q8FW21_BRUSU/42-126),Q9RV26_DEIRA/68-152)))))),(((((Q9CE69_LACLA/31-116,(Q7VG56_HELHP/77-162,Q84H85_9MICC/39-123)),(Q930M4_RHIME/308-395,Q828B2_STRAW/38-123)),(Q87H24_VIBPA/33-118,Q8EKK9_SHEON/33-118)),(Q930M4_RHIME/49-134,O26336_METTH/31-115)),((YNQ6_PARDE/40-126,Q52659_RHOCA/40-126),YNQ5_PARDE/35-121))))))),(O74758_SCHPO/128-205,YJ81_YEAST/199-283)),(P73604_SYNY3/23-107,Q89PM8_BRAJA/34-118))),(((O26787_METTH/36-120,Y742_METJA/19-103),Y1511_METJA/18-101),((Q8PSC4_METMA/27-113,Q8TP59_METAC/27-113),Q8TXW6_METKA/29-113)))))),(O69814_STRCO/47-126,(O06218_MYCTU/45-127,O68251_DEHMU/42-118)))),((Q9LBE9_PSEHY/66-154,O30263_ARCFU/32-115),(Q8U670_AGRT5/64-149,Q8U668_AGRT5/48-130))),(Q8GMI8_STRGL/41-122,(Q7MJJ5_VIBVY/55-138,(((Q88IP0_PSEPK/41-115,Q7NX57_CHRVO/41-125),(Q53427_LEGPN/38-123,Q7WJL9_BORBR/42-124)),Q7ULD6_RHOBA/54-137)))),Q9JUP9_NEIMA/41-123),(Q7UTX7_RHOBA/162-245,Q8ZSI6_ANASP/44-126)),(Q8DUG8_STRMU/42-124,Q8RR45_STRSU/50-134)),Q88GS9_PSEPK/72-155,Q9I1E7_PSEAE/38-118);
(((((((((((O53749_MYCTU/49-133:0.38721,Q9CB37_MYCLE/51-135:0.37234):1.03155,((((Q82QS6_STRAW/57-140:0.67123,Q8TN24_METAC/40-121:0.61212):0.38641,((Q7WNI3_BORBR/39-122:0.20457,Q872E4_NEUCR/44-109:0.82674):0.40289,Q89SZ5_BRAJA/50-134:0.89148):0.09455):0.08820,((Q89RQ0_BRAJA/34-116:0.74151,O53905_MYCTU/40-123:0.69292):0.08495,(Q89NA9_BRAJA/36-119:0.76084,Q9A3V6_CAUCR/52-136:0.67182):0.08176):0.28260):0.12136,(((Q7USN7_RHOBA/41-121:0.84946,(((Q7P0I8_CHRVO/10-92:0.57622,Q8FER3_ECOL6/13-95:0.27982):0.14872,((Q93HH4_STRAW/42-128:0.09419,Q9RJG5_STRCO/31-117:0.20029):0.28211,(Q8FN71_COREF/14-100:0.06293,Q8NN44_CORGL/15-100:0.28958):0.45947):0.09733):0.13723,((((Q89CI6_BRAJA/13-94:0.21314,Q98L97_RHILO/13-95:0.41353):0.20418,((Q8D7H9_VIBVU/12-94:0.55838,P96684_BACSU/12-94:0.39617):0.04996,(((Q82A02_STRAW/34-115:0.29531,((Q7WN29_BORBR/12-94:0.04926,Q89PR3_BRAJA/12-94:0.22128):0.54526,Q9KZB2_STRCO/10-92:0.31104):0.15297):0.24995,Q9KZB1_STRCO/28-109:0.04070):0.20510,Q82HT0_STRAW/32-114:0.00000):0.45701):0.04121):0.05391,(((((Q92XD0_RHIME/12-93:0.08446,Q987X0_RHILO/12-95:0.23918):0.24304,Q89D50_BRAJA/12-94:0.17556):0.02033,Q7WHA8_BORBR/12-94:0.27158):0.11334,(((Q8UI08_AGRT5/12-94:0.22112,Q92S80_RHIME/12-94:0.16847):0.12400,Q89M11_BRAJA/16-98:0.59968):0.10069,Q98K47_RHILO/12-94:0.23529):0.08187):0.06312,((Q7NXV7_CHRVO/15-94:0.32633,Q840R0_9GAMM/10-95:0.38169):0.13119,(Q7NMU5_GLOVI/47-129:0.29174,Q9I6M1_PSEAE/12-94:0.42203):0.10135):0.00000):0.03814):0.03624,(Q7VW83_BORPE/12-94:0.34782,((Q82PT4_STRAW/14-96:0.27517,Q9FC57_STRCO/14-95:0.10044):0.15069,Q9RDI4_STRCO/14-96:0.21868):0.27632):0.19628):0.15404):0.24913):0.00000,(Q7NI16_GLOVI/40-125:0.54090,Q8NUW4_STAAW/10-92:0.64257):0.12339):0.14450,Q82MM5_STRAW/103-186:1.12731):0.25861):0.07162):0.00000,Q89CP9_BRAJA/40-125:1.46836):0.11174,(((Q89F01_BRAJA/58-143:0.22868,(Q8FN18_COREF/270-361:0.29376,Q8NMX8_CORGL/269-355:0.31277):0.23595):0.59754,((Q89XS3_BRAJA/55-139:0.36463,Q8UJP9_AGRT5/55-127:0.55857):0.28773,Q881R7_PSESM/57-141:0.20886):0.12340):0.29228,(Q8GMC9_STRGL/56-141:0.67809,Q9RTJ7_DEIRA/77-160:0.82552):0.17656):0.68969):0.27137,((((Q984R0_RHILO/14-98:0.19309,Q98BX3_RHILO/57-141:0.36259):0.50852,(Q89IL8_BRAJA/43-126:0.33440,(Q8YLD1_ANASP/42-125:0.33083,(Q8UDR5_AGRT5/44-127:0.30212,Q98JY9_RHILO/46-129:0.19632):0.07679):0.07587):0.48606):0.24568,(((Q7VTI6_BORPE/91-170:0.12197,Q8XYW1_RALSO/93-173:0.29372):0.53253,(Q83BM5_COXBU/96-175:0.26251,((Q8FVW4_BRUSU/94-170:0.20039,Q9ANL0_BRAJA/95-178:0.23566):0.13345,(Q9A268_CAUCR/95-178:0.63445,((Q82IC5_STRAW/94-177:0.15806,Q9X5V1_STRVD/94-172:0.48014):0.03538,AHPD_MYCTU/93-176:0.48317):0.07086):0.05957):0.19850):0.18347):0.56479,((((Q8PT04_METMA/24-107:0.15009,Q8TNJ6_METAC/14-97:0.11807):0.81396,((Q8PZ63_METMA/30-113:0.11741,Q8PZX1_METMA/20-103:0.11359):0.41784,Q9WYF2_THEMA/12-95:0.78164):0.17632):0.11053,(((O26169_METTH/26-109:0.55428,(O29899_ARCFU/36-119:0.82110,Q8PYE4_METMA/43-127:0.54932):0.10258):0.04962,(Q8Q0J3_METMA/14-97:0.78998,(Q8UGQ2_AGRT5/19-101:0.51044,Q8Y972_LISMO/15-97:0.18645):0.24857):0.52592):0.41936,(((YCO4_PARDE/21-104:0.39788,((Q8EMR2_OCEIH/26-109:0.25835,Q8EMR2_OCEIH/135-218:0.16970):0.22027,((Q54401_STRLA/19-103:0.32662,Q89N13_BRAJA/21-105:0.17927):0.17816,Q8NLN6_CORGL/20-105:0.35294):0.27738):0.22925):0.20997,((((Q8DKG6_SYNEL/35-118:0.33568,((Q89I69_BRAJA/24-107:0.17380,Q7P1X7_CHRVO/26-109:0.13387):0.10493,Q8GQ78_PSEAE/24-107:0.18346):0.19605):0.02977,(O06800_MYCTU/26-109:0.49914,YAC7_ALCEU/24-107:0.59743):0.10053):0.03841,(((Q88K69_PSEPK/28-111:0.14461,Q7WQ74_BORBR/23-106:0.17244):0.05991,Q87XC8_PSESM/23-106:0.19197):0.08362,(Y1053_HAEIN/24-107:0.06363,(Q9I5X1_PSEAE/24-106:0.17404,Q9JTG8_NEIMA/24-106:0.10950):0.10544):0.30916):0.22929):0.14726,(Q8PYL6_METMA/19-102:0.44970,Q8RCV6_THETN/21-104:0.19546):0.16245):0.14099):0.08857,((O27018_METTH/13-96:0.67172,(Q8PUU3_METMA/18-101:0.20481,Q8PYV8_METMA/9-92:0.12445):0.46025):0.18087,(((Q978P3_THEVO/22-105:0.16908,Q9HLI4_THEAC/22-105:0.10192):0.48555,(Q81CE2_BACCR/28-111:0.17195,(O32166_BACSU/32-115:0.34738,Q9K796_BACHD/28-111:0.12173):0.00000):0.49031):0.10934,(Q8PZJ3_METMA/27-110:0.70314,(Q8PBZ0_XANCP/31-114:0.28307,Q9X1V5_THEMA/22-105:0.21267):0.55712):0.31957):0.18802):0.08254):0.05200):0.13157):0.08154,((Q7UPD1_RHOBA/39-122:1.13685,((((Q7VG63_HELHP/82-166:0.41452,(Q8A7Y1_BACTN/178-261:0.33856,Q8TTM1_METAC/27-111:0.19985):0.07334):0.54126,(Q87FG9_VIBPA/24-106:1.11282,(Q9RVP9_DEIRA/30-114:0.65024,(((Q8FQN1_COREF/33-119:0.86182,(Q8A7Y1_BACTN/311-396:0.27718,(Q7VG63_HELHP/216-301:0.26188,Q8RN34_CAMJE/39-124:0.30720):0.10673):0.51897):0.09425,(Q8A8P6_BACTN/142-227:0.54703,(Q87FG9_VIBPA/158-243:0.40710,Q9PCL2_XYLFA/167-252:0.60675):0.11302):0.62982):0.10769,(((Q930M4_RHIME/170-255:1.03860,(P71826_MYCTU/26-111:0.94286,Q8UH27_AGRT5/28-112:0.44220):0.15007):0.12255,((((Q7WPY0_BORBR/32-117:0.32831,Q8CL33_YERPE/30-114:0.25280):0.11216,((((Q930A6_RHIME/41-125:0.30755,(Q89LE4_BRAJA/50-134:0.10639,Q8Y1Q8_RALSO/21-105:0.62658):0.13731):0.13636,(Q881M4_PSESM/43-127:0.26628,Q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