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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF02415 phylogeny
for nucleotide alignment


 
((((((((((((((((((PMP21_CHLPN/952-977,PMPG_CHLMU/168-186),(((((Q823X4_CHLCV/190-208,(((PMPD_CHLMU/156-174,PMP12_CHLPN/150-168),Q9RB71_CHLPN/57-75),(P71135_CHLAB/212-230,Q823W9_CHLCV/212-230))),(PMP21_CHLPN/914-942,Q821X9_CHLCV/852-879)),((PMPD_CHLTR/846-871,(Q821X9_CHLCV/533-559,(Q7USQ0_RHOBA/193-216,Q7UZ67_RHOBA/477-494))),PMPD_CHLMU/841-866)),PMPB_CHLMU/278-296),((PMPB_CHLMU/54-125,PMPC_CHLMU/389-407),PMPC_CHLTR/138-164))),(((Q821X9_CHLCV/570-618,Q824E6_CHLCV/251-269),(PMP10_CHLPN/305-327,PMPF_CHLTR/277-303)),PMP10_CHLPN/276-294)),((((((PMPD_CHLTR/446-482,PMP18_CHLPN/139-166),PMPD_CHLTR/650-668),PMPA_CHLTR/359-378),(((Q823Y0_CHLCV/194-215,(PMPG_CHLTR/205-223,PMPG_CHLMU/196-214)),(PMPD_CHLTR/378-405,(PMP18_CHLPN/205-224,Q823Y1_CHLCV/168-186))),PMPD_CHLMU/387-405)),((PMPD_CHLTR/881-898,Q9RB68_CHLPN/326-347),PMP21_CHLPN/750-771)),(((PMPC_CHLTR/841-871,PMPC_CHLMU/571-599),(PMPB_CHLMU/792-820,Q824E7_CHLCV/905-939)),(PMP13_CHLPN/338-356,Q824E7_CHLCV/448-466)))),(((((PMP20_CHLPN/1099-1128,Q9RB71_CHLPN/85-112),((((PMP1_CHLPN/154-172,PMP21_CHLPN/501-519),(Q824E6_CHLCV/222-239,PMP19_CHLPN/219-236)),PMPF_CHLTR/209-238),PMPA_CHLTR/247-264)),(((((Q823X1_CHLCV/181-199,PMP18_CHLPN/234-251),PMP21_CHLPN/543-572),PMPA_CHLTR/208-234),(PMP19_CHLPN/181-206,PMP19_CHLPN/248-265)),((((PMPD_CHLTR/407-433,PMPD_CHLMU/407-433),(Q7VQ06_CHLPN/202-223,PMP15_CHLPN/181-202)),(((PMP6_CHLPN/272-300,(Q7UYI1_RHOBA/206-225,PMP6_CHLPN/402-430)),(((PMP12_CHLPN/81-108,PMP12_CHLPN/187-205),PMPD_CHLTR/679-697),PMP1_CHLPN/239-261)),((P71135_CHLAB/240-262,Q823W9_CHLCV/240-262),(PMP16_CHLPN/142-168,PMP6_CHLPN/533-561)))),(PMPF_CHLMU/202-231,Q823X1_CHLCV/238-260)))),((PMPC_CHLTR/166-192,Q823X5_CHLCV/171-189),(Q823Y0_CHLCV/253-275,(((PMPF_CHLMU/270-296,PMP21_CHLPN/436-462),((PMP20_CHLPN/221-239,PMPC_CHLMU/242-260),Q824E7_CHLCV/231-249)),(PMP10_CHLPN/149-175,Q823Y0_CHLCV/225-242))))),(((Q821X9_CHLCV/667-688,(Q821X9_CHLCV/757-794,(PMPD_CHLMU/581-606,((Q821X9_CHLCV/496-523,Q821X9_CHLCV/628-657),PMPE_CHLTR/93-111)))),((P77792_CHLAB/248-268,((Q9RB68_CHLPN/360-404,PMPG_CHLMU/401-421),PMPG_CHLTR/421-446)),PMP7_CHLPN/344-360)),((((PMPE_CHLTR/258-286,PMPE_CHLMU/258-286),(PMPG_CHLTR/169-195,Q7VQA1_CHLPN/234-260)),((PMPF_CHLTR/250-267,((Q823Y1_CHLCV/197-218,PMPF_CHLMU/103-123),PMP15_CHLPN/278-296)),(PMPE_CHLTR/159-186,PMPE_CHLMU/160-187))),YFAL_ECOLI/186-211)))),(((((((PMP15_CHLPN/87-105,Q7UWZ8_RHOBA/1086-1105),Q7UYI1_RHOBA/181-199),(((Q8PEM4_XANAC/369-387,(((((((PMP14_CHLPN/435-451,Q7UZ67_RHOBA/447-470),Q7UZ67_RHOBA/504-522),((Q7UYI1_RHOBA/367-385,Q7UYI1_RHOBA/260-278),PMPH_CHLTR/242-260)),((((Q7USQ0_RHOBA/574-600,Q7USQ0_RHOBA/2144-2170),Q7USQ0_RHOBA/919-942),((Q7USQ0_RHOBA/2384-2405,Q7USQ0_RHOBA/370-391),(Q7USQ0_RHOBA/2527-2545,Q7USQ0_RHOBA/1450-1468))),(((Q82QS3_STRAW/231-259,Q82QS3_STRAW/268-286),Q7USQ0_RHOBA/486-509),((((Q7USQ0_RHOBA/313-331,((Q7USQ0_RHOBA/609-626,Q7USQ0_RHOBA/1185-1203),Q7USQ0_RHOBA/1039-1057)),Q7USQ0_RHOBA/2473-2491),Q7USQ0_RHOBA/1589-1607),((Q7USQ0_RHOBA/1507-1528,(Q7UWZ8_RHOBA/3685-3702,Q7USQ0_RHOBA/949-970)),(Q7USQ0_RHOBA/1647-1668,(Q7USQ0_RHOBA/1096-1117,(Q7USQ0_RHOBA/224-245,Q7USQ0_RHOBA/1794-1815)))))))),(Q7USQ0_RHOBA/1065-1088,(Q7USQ0_RHOBA/2205-2228,((Q7USQ0_RHOBA/1212-1229,Q82QS3_STRAW/181-198),Q7USQ0_RHOBA/635-652)))),(((Q7USQ0_RHOBA/339-362,Q7UYI1_RHOBA/313-332),((Q7USQ0_RHOBA/1476-1499,PMPB_CHLMU/560-579),Q7USQ0_RHOBA/2353-2376)),Q7USQ0_RHOBA/1616-1639)),(((Q7UYI1_RHOBA/394-412,Q823X6_CHLCV/182-199),Q7UWZ8_RHOBA/1112-1132),Q7UWZ8_RHOBA/3661-3680))),((((Q7USQ0_RHOBA/547-565,Q7USQ0_RHOBA/2265-2283),Q7USQ0_RHOBA/2117-2135),(Q7USQ0_RHOBA/1124-1142,(Q7USQ0_RHOBA/252-270,Q7USQ0_RHOBA/1675-1693))),((PMP20_CHLPN/432-450,PMP18_CHLPN/177-195),Q823Y1_CHLCV/132-158))),(Q7UWZ8_RHOBA/1058-1077,((Q824E7_CHLCV/603-621,Q8PEM4_XANAC/193-210),(PMP7_CHLPN/218-236,(PMP21_CHLPN/810-827,(PMPF_CHLMU/133-164,PMPF_CHLTR/140-171))))))),(((((Q7USQ0_RHOBA/432-450,Q7USQ0_RHOBA/1562-1580),((Q7USQ0_RHOBA/279-304,(Q7USQ0_RHOBA/1004-1030,Q7USQ0_RHOBA/1151-1176)),Q7USQ0_RHOBA/2439-2464)),YFAL_ECOLI/127-145),YFAL_ECOLI/159-178),YFAL_ECOLI/228-246)),(((Q824E7_CHLCV/632-650,PMP20_CHLPN/642-660),Q823X2_CHLCV/217-235),Q823X5_CHLCV/374-391)),((Q7UYI1_RHOBA/607-625,YFAL_ECOLI/67-82),PMP20_CHLPN/460-478)),((((Q823Y1_CHLCV/256-285,(Q7UWZ8_RHOBA/1006-1025,Q8PEM4_XANAC/166-184)),PMPF_CHLTR/110-130),((PMPE_CHLTR/231-248,PMPE_CHLMU/231-248),((Q824E6_CHLCV/150-168,(PMP21_CHLPN/582-608,PMP21_CHLPN/710-740)),PMP19_CHLPN/140-166))),(((PMPD_CHLMU/529-572,PMPD_CHLTR/529-572),PMPG_CHLMU/283-329),PMPG_CHLTR/304-343)))),(((((((PMP20_CHLPN/716-734,Q824E7_CHLCV/704-722),Q824E7_CHLCV/776-794),(PMP20_CHLPN/830-848,(((((PMPC_CHLTR/542-560,(Q7UYI1_RHOBA/474-492,PMPB_CHLMU/666-684)),Q824E7_CHLCV/803-821),Q824E7_CHLCV/831-849),((((PMP7_CHLPN/187-207,PMP20_CHLPN/585-603),PMP20_CHLPN/803-820),Q824E7_CHLCV/575-593),(PMPC_CHLTR/355-373,(PMPB_CHLMU/459-477,((PMPG_CHLTR/277-294,PMPG_CHLMU/264-281),PMP20_CHLPN/278-296))))),PMPC_CHLTR/394-412))),(PMPB_CHLMU/639-657,(PMPC_CHLTR/275-316,Q824E7_CHLCV/7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8_CHLPN/188-206))),(PMPF_CHLTR/180-198,(Q823Y2_CHLCV/172-190,PMPA_CHLTR/332-350)))),PMP6_CHLPN/579-597))),(Q824E6_CHLCV/307-324,(PMP20_CHLPN/933-960,(YFAL_ECOLI/97-118,Q823Y2_CHLCV/258-284)))),(((((PMP6_CHLPN/186-204,Q9RB71_CHLPN/28-46),PMP9_CHLPN/211-229),PMP20_CHLPN/489-507),PMP8_CHLPN/245-266),((((PMP16_CHLPN/236-253,PMPH_CHLTR/318-336),(((P71135_CHLAB/155-173,PMP8_CHLPN/157-178),PMP16_CHLPN/300-318),(PMP7_CHLPN/159-177,Q823X9_CHLCV/128-153))),Q824E6_CHLCV/183-209),((((PMPC_CHLTR/1040-1077,PMPC_CHLMU/764-796),PMP14_CHLPN/108-126),Q824E7_CHLCV/260-330),Q823X6_CHLCV/313-331))))))),((Q824E7_CHLCV/203-221,(PMPC_CHLMU/214-232,PMP19_CHLPN/94-112)),PMPB_CHLMU/141-159)),((PMP6_CHLPN/344-363,PMP6_CHLPN/476-494),PMPA_CHLTR/276-294)),(PMPC_CHLTR/884-909,Q824E7_CHLCV/950-977)),PMP8_CHLPN/281-299),((PMP15_CHLPN/241-268,PMP21_CHLPN/840-864),(PMP21_CHLPN/472-490,PMP19_CHLPN/303-320))),(((Q823Y1_CHLCV/295-313,Q7UYI1_RHOBA/234-252),PMP18_CHLPN/298-316),PMP6_CHLPN/158-176)),(Q823X4_CHLCV/95-113,PMPD_CHLTR/492-518)),(PMP13_CHLPN/280-319,PMP7_CHLPN/281-299)),((Q823Y2_CHLCV/221-247,PMPD_CHLMU/324-348),PMPD_CHLTR/324-349)),PMPD_CHLTR/176-203,PMPD_CHLMU/176-203);
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