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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF02415 phylogeny
for amino acid alignment


 
((((((((((((((((((((((PMPB_CHLTR/898-925,PMPC_CHLTR/884-909),Q824E7_CHLCV/950-977),Q821X9_CHLCV/422-440),(PMP10_CHLPN/217-235,PMP20_CHLPN/933-960)),((PMP7_CHLPN/281-299,(PMPB_CHLMU/722-782,PMPB_CHLTR/791-847)),Q823X5_CHLCV/347-365)),Q823X3_CHLCV/188-206),(((((Q823X5_CHLCV/290-318,PMP13_CHLPN/280-319),(Q824E6_CHLCV/150-168,PMP14_CHLPN/232-274)),PMP20_CHLPN/1045-1063),((((PMP6_CHLPN/272-300,(PMP1_CHLPN/239-261,PMPD_CHLTR/679-697)),(Q824E6_CHLCV/222-239,PMP19_CHLPN/219-236)),PMP21_CHLPN/501-519),((((PMPF_CHLTR/209-238,PMPF_CHLMU/202-231),(Q7UWZ8_RHOBA/1032-1051,PMPH_CHLTR/373-390)),(((PMP19_CHLPN/303-320,(PMPD_CHLTR/267-286,PMPD_CHLMU/267-286)),(Q821X9_CHLCV/301-320,PMP21_CHLPN/347-366)),((PMPI_CHLTR/219-236,PMP11_CHLPN/237-255),((((Q8PEM4_XANAC/369-387,PMP20_CHLPN/1010-1027),(PMPA_CHLTR/247-264,(Q821X9_CHLCV/451-469,PMP1_CHLPN/280-298))),((PMPH_CHLTR/270-306,PMPH_CHLMU/245-280),Q823X6_CHLCV/240-274)),PMP7_CHLPN/246-268)))),(PMPA_CHLTR/332-350,PMPA_CHLMU/333-351)))),(((PMP13_CHLPN/253-270,((((PMPF_CHLTR/110-130,PMPF_CHLMU/103-123),(PMPE_CHLTR/231-248,PMPE_CHLMU/231-248)),(((PMPC_CHLTR/138-164,Q7UWZ8_RHOBA/1086-1105),Q824E7_CHLCV/420-438),Q823Y1_CHLCV/132-158)),((Q823Y1_CHLCV/295-313,PMPF_CHLMU/270-296),PMP6_CHLPN/579-597))),((((PMPC_CHLTR/421-439,Q824E6_CHLCV/251-269),(PMP11_CHLPN/270-288,((PMP21_CHLPN/436-462,(PMPB_CHLTR/158-176,Q823X2_CHLCV/182-208)),(((PMPD_CHLMU/324-348,Q821X9_CHLCV/667-688),((((Q821X9_CHLCV/533-559,PMP21_CHLPN/472-490),PMPD_CHLMU/387-405),((((PMP21_CHLPN/582-608,PMP21_CHLPN/710-740),PMPD_CHLTR/492-518),Q821X9_CHLCV/628-657),PMPD_CHLTR/324-349)),((PMP21_CHLPN/840-864,Q821X9_CHLCV/757-794),PMPD_CHLMU/351-377))),PMP20_CHLPN/390-421)))),((((Q821X9_CHLCV/386-412,(PMPD_CHLTR/612-641,PMPD_CHLMU/616-637)),(((PMP7_CHLPN/218-236,PMP1_CHLPN/210-229),((((PMP14_CHLPN/212-230,((PMPH_CHLTR/242-260,PMPH_CHLMU/217-235),Q823X6_CHLCV/212-230)),PMPB_CHLMU/588-607),(PMPD_CHLTR/446-482,PMPD_CHLTR/650-668)),((Q821X9_CHLCV/496-523,PMP21_CHLPN/543-572),PMPD_CHLMU/581-606))),(Q7VQ06_CHLPN/110-128,Q823X1_CHLCV/274-292))),(Q823Y1_CHLCV/256-285,PMP9_CHLPN/239-260)),((((Q7UWZ8_RHOBA/1006-1025,PMP1_CHLPN/154-172),Q823Y0_CHLCV/285-303),(Q7VQA1_CHLPN/214-232,Q823Y2_CHLCV/258-284)),(((Q823X9_CHLCV/191-212,(((PMPD_CHLTR/407-433,(Q7VQ06_CHLPN/202-223,PMP15_CHLPN/181-202)),PMPD_CHLMU/407-433),(((Q821X9_CHLCV/727-745,PMP21_CHLPN/810-827),PMP1_CHLPN/182-199),(PMP19_CHLPN/181-206,PMP19_CHLPN/248-265)))),(Q823X1_CHLCV/181-199,PMP18_CHLPN/177-195)),(((PMPD_CHLTR/297-314,Q9RB71_CHLPN/85-112),PMPD_CHLMU/297-314),((PMPI_CHLTR/135-153,PMPI_CHLMU/136-154),((PMPG_CHLMU/168-186,Q7VQ06_CHLPN/138-163),Q824E6_CHLCV/183-209))))))),((Q7VQA1_CHLPN/277-295,((PMPF_CHLTR/180-198,PMPF_CHLMU/173-191),((Q823Y2_CHLCV/105-123,PMPC_CHLMU/417-435),PMP2_CHLPN/189-207))),((Q8PEM4_XANAC/166-184,Q823Y1_CHLCV/168-186),(PMPG_CHLTR/391-408,(Q823X5_CHLCV/199-216,PMP11_CHLPN/209-227)))))),(((((PMPC_CHLTR/327-345,PMP14_CHLPN/435-451),(Q7UWZ8_RHOBA/3661-3680,Q823X6_CHLCV/182-199)),(((PMP12_CHLPN/81-108,PMP13_CHLPN/166-184),PMP14_CHLPN/182-199),(PMPB_CHLTR/1072-1106,(PMPC_CHLTR/1040-1077,PMPC_CHLMU/764-796)))),(Q823X5_CHLCV/226-244,PMP8_CHLPN/188-206)),(((PMP16_CHLPN/179-197,Q823X1_CHLCV/301-322),PMP20_CHLPN/1099-1128),((((((PMP8_CHLPN/217-235,PMP16_CHLPN/142-168),(PMP18_CHLPN/205-224,(PMP16_CHLPN/208-226,(((PMPF_CHLTR/341-358,Q823X9_CHLCV/310-327),PMP15_CHLPN/305-322),Q823Y1_CHLCV/322-339)))),PMP20_CHLPN/970-1001),(((PMPC_CHLTR/916-947,PMPC_CHLMU/644-671),Q824E6_CHLCV/279-297),((PMPB_CHLTR/932-969,PMPB_CHLMU/867-899),Q824E7_CHLCV/987-1022))),PMPF_CHLMU/307-325),PMPA_CHLTR/208-234)))))),((YFAL_ECOLI/97-118,(PMPG_CHLTR/304-343,((PMPD_CHLMU/529-572,PMPD_CHLTR/529-572),PMPG_CHLMU/283-329))),(((Q9RB71_CHLPN/127-145,((Q823X1_CHLCV/153-171,((Q823X0_CHLCV/153-171,(Q823X3_CHLCV/154-172,(Q822Q5_CHLCV/153-171,(Q8VU50_CHLPS/154-172,(PMP11_CHLPN/152-170,PMP2_CHLPN/161-179))))),(P71133_CHLAB/155-173,P71132_CHLAB/149-175))),PMPF_CHLTR/314-332)),((PMP8_CHLPN/157-178,(((P71135_CHLAB/155-173,(PMP9_CHLPN/155-173,((Q9RB68_CHLPN/154-172,PMP19_CHLPN/122-138),PMP13_CHLPN/194-212))),PMP7_CHLPN/159-177),Q7VQA1_CHLPN/157-175)),(((PMPA_CHLTR/175-193,PMPI_CHLTR/163-181),Q823X9_CHLCV/128-153),(PMPF_CHLTR/277-303,PMP16_CHLPN/236-253)))),(((((PMP10_CHLPN/149-175,(((PMPG_CHLTR/169-195,(Q7UYI1_RHOBA/206-225,Q7UYI1_RHOBA/313-332)),((PMPE_CHLTR/258-286,PMPE_CHLMU/258-286),YFAL_ECOLI/186-211)),Q823Y0_CHLCV/253-275)),(((PMPE_CHLTR/159-186,PMPE_CHLMU/160-187),Q7VQA1_CHLPN/234-260),Q823Y0_CHLCV/225-242)),PMP15_CHLPN/278-296),(((Q9RB68_CHLPN/360-404,((PMPG_CHLTR/421-446,PMPG_CHLMU/401-421),(P77792_CHLAB/248-268,(Q7UWZ8_RHOBA/3685-3702,PMP7_CHLPN/344-360)))),((Q7UYI1_RHOBA/394-412,PMP21_CHLPN/875-893),PMP21_CHLPN/914-942)),(PMP6_CHLPN/317-335,(P71135_CHLAB/183-201,((Q9RB68_CHLPN/239-260,Q823X2_CHLCV/153-171),(PMPB_CHLMU/362-420,PMP20_CHLPN/517-574)))))),((Q823X0_CHLCV/210-228,(((PMPI_CHLTR/254-272,Q823X6_CHLCV/340-357),Q823X9_CHLCV/162-180),Q823Y2_CHLCV/201-220)),((PMPF_CHLTR/140-171,(Q823Y1_CHLCV/197-2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