EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF02399 - Herpes_ori_bp)
Origin of replication binding protein
(Pfam reference: accession no. PF02399)
(Interpro reference: accession no. IPR003450)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
8 sequences @ 881 aa
(ave. pairwise identity: 0.41)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 4.51)
nucleotides
(available for above)
7 sequences @ 2643 bp
(ave. pairwise identity: 0.46)
New Hampshire format
(total tree length: 3.24)
amino acids, restricted set
(corresp. to available nt seqs)
7 sequences @ 881 aa
(ave. pairwise identity: 0.39)
New Hampshire format
(total tree length: 4.16)