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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF02195 phylogeny
for nucleotide alignment


 
((((((((((YBDM_ECOLI/51-146,(O68746_YERPE/20-104,YNAK_ECOLI/8-87)),((O93666_9CREN/8-95,O93707_9CREN/8-95),((Y4YB_RHISN/6-99,P95946_SULSO/7-88),((((((O27343_METTH/148-230,Y188_METJA/147-231),O29009_ARCFU/147-229),O59055_PYRHO/59-141),O58266_PYRHO/19-114),(O66661_AQUAE/16-105,O66789_AQUAE/20-110)),(O34093_LEPIN/1-85,O51673_BORBU/1-85))))),O68747_YERPE/14-104),(O64340_BPN15/70-157,((O68788_YERPE/51-138,Q38420_BPP1/55-143),VIRB_SHIFL/39-126))),O74043_CERSY/18-112),((KORB2_ECOLI/54-147,((((O07327_STRCO/62-152,PARB_MYCTU/61-155),PARB_CAUCR/35-127),PARB_TREPA/33-123),((P94615_COXBU/38-127,((((O06671_STRPN/5-95,SP0J_BACSU/24-113),(PARB_RICPR/28-114,PARB_BORBU/6-95)),Q57088_COXBU/51-141),((PARB_CHLTR/12-105,PARB_CHLPN/11-106),YYAA_BACSU/31-122))),PARB_PSEPK/37-127))),(((O66166_9RHIZ/66-158,Y4CJ_RHISN/55-146),(REPB_AGRRH/49-137,Q36690_RHILE/55-146)),((Q52302_9ZZZZ/61-155,O85858_SPHAR/53-154),Q52628_PARVE/48-135)))),((O68794_YERPE/37-133,Q9ZGR8_ECO57/56-152),O85866_SPHAR/20-118)),YKI6_YEAST/11-126),P72440_STRNE/9-93),Q54267_STRGA/33-117,STRR_STRGR/34-118);
((((((((((YBDM_ECOLI/51-146:0.82167,(O68746_YERPE/20-104:0.35143,YNAK_ECOLI/8-87:0.49364):0.22130):0.06967,((O93666_9CREN/8-95:0.23043,O93707_9CREN/8-95:0.32524):0.40325,((Y4YB_RHISN/6-99:0.62574,P95946_SULSO/7-88:0.61051):0.20773,((((((O27343_METTH/148-230:0.21149,Y188_METJA/147-231:0.32693):0.06099,O29009_ARCFU/147-229:0.32373):0.18378,O59055_PYRHO/59-141:0.64628):0.08298,O58266_PYRHO/19-114:0.59691):0.07082,(O66661_AQUAE/16-105:0.32552,O66789_AQUAE/20-110:0.25709):0.25971):0.09171,(O34093_LEPIN/1-85:0.44120,O51673_BORBU/1-85:0.20401):0.42073):0.03238):0.03439):0.15202):0.16779,O68747_YERPE/14-104:0.47233):0.14350,(O64340_BPN15/70-157:0.33863,((O68788_YERPE/51-138:0.33666,Q38420_BPP1/55-143:0.33014):0.08502,VIRB_SHIFL/39-126:0.29088):0.49620):0.69133):0.01002,O74043_CERSY/18-112:0.56337):0.09003,((KORB2_ECOLI/54-147:0.47686,((((O07327_STRCO/62-152:0.23119,PARB_MYCTU/61-155:0.20210):0.18880,PARB_CAUCR/35-127:0.25194):0.02095,PARB_TREPA/33-123:0.49045):0.03443,((P94615_COXBU/38-127:0.09371,((((O06671_STRPN/5-95:0.27031,SP0J_BACSU/24-113:0.36781):0.06882,(PARB_RICPR/28-114:0.37568,PARB_BORBU/6-95:0.42878):0.08448):0.10549,Q57088_COXBU/51-141:0.32711):0.07065,((PARB_CHLTR/12-105:0.21121,PARB_CHLPN/11-106:0.18430):0.28778,YYAA_BACSU/31-122:0.36153):0.11259):0.11642):0.31156,PARB_PSEPK/37-127:0.13615):0.13908):0.08703):0.05784,(((O66166_9RHIZ/66-158:0.37756,Y4CJ_RHISN/55-146:0.34946):0.04739,(REPB_AGRRH/49-137:0.30820,Q36690_RHILE/55-146:0.31025):0.05948):0.17840,((Q52302_9ZZZZ/61-155:0.51115,O85858_SPHAR/53-154:0.55652):0.28919,Q52628_PARVE/48-135:0.39189):0.10134):0.16717):0.08115):0.13109,((O68794_YERPE/37-133:0.19038,Q9ZGR8_ECO57/56-152:0.28573):0.28556,O85866_SPHAR/20-118:0.36183):0.18263):0.12792,YKI6_YEAST/11-126:0.84294):0.21441,P72440_STRNE/9-93:0.42914):0.06678,Q54267_STRGA/33-117:0.17003,STRR_STRGR/34-118:0.17298);