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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF02176 alignment
(14 sequences with 180 bp)


TRAF6_MOUSE/151-200 CATCAAGTA---CATTGTGAATTTGCTCTAGTGAATTGTCCCCAG------TGCCAA---CGTCCTTTCCAGAAGTGCCAGGTTAATACACACATTATTGAGGATTGTCCCAGGAGGCAGGTTTCTTGTGTAAAC------------TGTGCTGTGTCCATGGCATATGAAGAG------
TRAF6_MOUSE/204-258 CATGATCAA---AGCTGTCCTCTGGCAAATATCATCTGTGAATAC------TGTGGT---ACAATCCTCATCAGAGAACAGATGCCTAATCATTATGATCTGGACTGCCCAACAGCTCCAATCCCTTGCACATTCAGTGTTTTTGGCTGTCATCAAAAGATGCAGAGGAATCACTTG---
DG17_DICDI/194-250 CATTATAAG---ACATGTCCTATGGTTCCAATTGATTGCTCACAA---GGTTGTTCA---GTGAAAATTGAAAGGAAATCAATTATCGATCATATTGAAAATGATTGTTGTAATACTCAAATACCATGTAAATATTTTGAACAAGGTTGTAAAGTTGAGATGAAGAGATCAGAATTACAA
TRAF2_HUMAN/178-233 CACCACGAG---GTCTGCCCCAAGTTCCCCTTAACTTGTGACGGC------TGCGGCAAGAAGAAGATCCCCCGGGAGAAGTTTCAGGACCACGTCAAGACT---TGTGGCAAGTGTCGAGTCCCTTGCAGATTCCACGCCATCGGCTGCCTCGAGACGGTAGAGGGTGAGAAACAGCAG
TRAF2_MOUSE/178-233 CACTATGAG---GTCTGCCCCAAGTTTCCCTTAACCTGTGATGGC------TGTGGCAAGAAGAAGATCCCTCGGGAGACGTTTCAGGACCATGTTAGAGCA---TGCAGCAAATGCCGGGTTCTCTGCAGATTCCACACCGTTGGCTGTTCAGAGATGGTGGAGACTGAGAACCTGCAG
TRAF4_HUMAN/210-266 CACCAGTAC---CAGTGCCCAAGGCTGCCTGTTGCCTGCCCCAAC---CAATGTGGTGTGGGCACTGTGGCTCGGGAGGACCTGCCAGGCCATCTGAAGGACAGCTGTAACACCGCCCTGGTGCTCTGCCCATTCAAAGACTCCGGCTGCAAGCACAGGTGCCCTAAGCTGGCAATG---
TRAF5_HUMAN/183-239 CATGAGGAAAACTTGTGTCCTGAATACCCAGTATTTTGTCCCAAC---AATTGTGCG---AAGATTATTCTAAAAACTGAGGTAGATGAACACCTGGCTGTA---TGTCCTGAAGCTGAGCAAGACTGTCCTTTTAAGCACTATGGCTGTGCTGTAACGGATAAACGGAGGAACCTGCAG
TRAF3_HUMAN/192-249 CACGAAGACACCGACTGTCCCTGCGTGGTGGTGTCCTGCCCTCAC---AAGTGCAGCGTCCAGACTCTCCTGAGGAGCGAGTTGAGTGCACACTTGTCAGAG---TGTGTCAATGCCCCCAGCACCTGTAGTTTTAAGCGCTATGGCTGCGTTTTTCAGGGGACAAACCAGCAGATCAAG
O62248_CAEEL/152-208 CATCCAAAG---ACCTGTCCTCAAGTTATCATCAGCTGCCCATTC---CAGTGCGGTCTCACCGACCGCCCACGTCTCGAGATCGAAGCTCATTGTCCCAGC---TGTCCAAATGTTGACAACGTGTGCCCATTTGTACCATATGGATGCACGTTTGCAGGAGGAAAAGAGTCAATTCAA
TRAF4_HUMAN/102-154 CACCTGAAT---ACCTGCAGCTTCAATGTCATTCCCTGCCCTAAT---CGCTGCCCC---ATGAAGCTGAGCCGCCGTGATCTACCTGCACACTTGCAGCATGACTGCCCCAAGCGGCGCCTCAAGTGCGAGTTT------------TGTGGCTGTGACTTCAGTGGGGAGGCCTATGAG
TRAF3_HUMAN/136-190 CATTTAAAAAATGATTGCCATTTTGAAGAACTTCCATGTGTGCGTCCTGACTGCAAA---GAAAAGGTCTTGAGGAAAGACCTGCGAGACCACGTGGAGAAGGCGTGTAAATACCGGGAAGCCACATGCAGCCAC------------TGCAAGAGTCAGGTTCCGATGATCGCGCTGCAG
TRAF5_MOUSE/128-181 CACCTTCAG---CACTGTTCCTTCCAAGCCGTGCCCTGCCCTAACGAGAGCTGCCGG---GAAGCCATGCTCCGGAAAGACGTGAAAGAGCACCTGAGCGCATACTGCCGGTTCCGAGAGGAGAAGTGCCTTTAC------------TGCAAAAGGGACATAGTGGTGACCAACCTGCAG
TRAF5_HUMAN/128-181 CACCTTCAG---CAGTGCTTATTTCAACCTGTGCAGTGTTCTAATGAGAAGTGCCGG---GAGCCAGTCCTACGGAAAGACCTGAAAGAGCATTTGAGTGCATCCTGTCAGTTTCGAAAGGAAAAATGCCTTTAT------------TGCAAAAAGGATGTGGTAGTCATCAATCTACAG
TRAF4_HUMAN/156-208 CATGAGGGT---ATGTGCCCCCAGGAGAGTGTCTACTGTGAGAAT---AAGTGTGGT---GCCCGCATGATGCGGCGGCTGCTGGCCCAGCATGCCACCTCTGAGTGCCCCAAGCGCACTCAGCCCTGCACCTAC------------TGCACTAAGGAGTTCGTCTTTGACACCATCCAG