EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF02176 - zf-TRAF)
TRAF-type zinc finger
(Pfam reference: accession no. PF02176)
(Interpro reference: accession no. IPR001293)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
14 sequences @ 60 aa
(ave. pairwise identity: 0.31)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 11.40)
nucleotides
(available for above)
14 sequences @ 180 bp
(ave. pairwise identity: 0.43)
New Hampshire format
(total tree length: 7.18)
amino acids, restricted set
(corresp. to available nt seqs)
14 sequences @ 60 aa
(ave. pairwise identity: 0.31)
New Hampshire format
(total tree length: 11.40)