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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF02113 alignment
(9 sequences with 401 aa)


Q9Z541_STRCO/89-426 ERLGTDVSGVVLDADSDTALWDHNGSTALMPASNAKLATATTALTLLGAN------HEFTTKVVYGEGTLTLVGGGDRTLTGEDVAELARTAADG----LRAAGRTDVQVRVDDSLFADP-----SLAEG-WNEGYYPTEVAP--------------------------VR-SLVVDGAAVQDTS---------IDAG---KVFAKKLAAQGITVTGEVGRQTAKQS--.DVPVAQHKSAPLSDIVKKMLKTSDNNIAETLLRMTAVELG.KPGTFEAGTALVRQVLSS-YGISLDNFEMHDGSGLSRADRIPAATLAQLLDAIT--ESPALGSILEGLPVSGEAGASLGPEWGRFDDPNS-ECAVGKVHAKTGTLTGAIALSGVTRTDDGDWRIFSFIEN
O69539_MYCLE/95-437 AMTAKELWQQQDDMPLVPASANKLLTAAAALLTLDRQTRISTRVVAAGP-------NAQGPVVLVGAGDPTLSAASPDQSTWYRGAPRISDLVEQ----VRRSGVTPTAVQVDTSLFTGP-----TMAQG-WDPADVDNGYTA------------------------PIESAMIDAGRIQPTTVK----SRRSRTPALDAGRELAKALGVAPDAVTIVKASSG------.ARQLAVVQSAPLVQRLSEMMDNSDNVLAECIGREVAAAIN.RPLSFAGAVDAVTNRLGT-AHIDTTGAALVDSSGLSVNNRLTAKTLGGAVQAAAGPDQPVLRALLDLLPIAGGSGTLSD---RFLSSATH-QGPAGWLRAKTGSLTAINSLVGVVTDRSGRVLTFAFISN
O06380_MYCTU/95-437 ALTGQELWQRLDDVPLVPASTNKILTAAAALLTLDRQARISTRVVAGGQ-------NPQGPVVLVGAGDPTLSAAPPGQDTWYHGAARIGDLVEQ----IRRSGVTPTAVQVDASAFSGP-----TMAPG-WDPADIDNGDIA------------------------PIEAAMIDAGRIQPTTVN----SRRSRTPALDAGRELAKALGLDPAAVTIASAPAG------.ARQLAVVQSAPLIQRLSQMMNASDNVMAECIGREVAVAIN.RPQSFSGAVDAVTSRLNT-AHIDTAGAALVDSSGLSLDNRLTARTLDATMQAAAGPDQPALRPLLDLLPIAGGSGTLGE---RFLDAATD-QGPAGWLRAKTGSLTAINSLVGVLTDRSGRVLTFAFISN
O85665_NEIGO/56-433 PASTMKLVTAFAAFKTFGSNYRWATEFKSNGTVNDGTLDGNLYWAGSGDPVFNQENLLAVQRQLRDKGIRNITGRLMLDHSLWG-EVGSPDHFEADSGSPFMTPPNPTMLSAGMVMVRAERN--AAGSTDILTDPPLPHIFAQNN---LKITASQAACPSVKKLMRASFSGNTLKLRGNIPESCLGKPVGVRMFALDELIRQTFTNRWLLGGGRISDGIGIADTPEG--.AHTLAVAHSKPMKEILTDMNKRSDNLIARSVFLKLGGDGK.LPAVSEQAASAVRRELAV-SGIDVADLVLENGSGLSRKERVTARMMAQILETAY--FSPFAQDFIDTLPIAGTDGTLRN--------RFK--QSGGLLRLKTGTLNNVRALAGYWLGDKPMAVVVIINSG
Q55728_SYNY3/88-453 PASNQKLITTAMALQELGPNFRFTTQVYQRDGGKKVQVISSGDPSFDVDD------LTAIAKGLKDRGVTAIEELELVDTIAPQDYQRPSWEWDD-LHYGYAPPVNGAILTGNQVILTLTPQNLGEPLTPTWSDPIAGAQWQIIN------QTETAVDPHQPPQVQQIFGQRQLVITGGLPPAGETRSITLAVADPQQYFLASLQQKLAEQGISVSTSIVSANTKAIAP.-APLLALTSPPLWTLIKTVNQDSNNLYAEALLNAIQPP--.------SQATDWQSYVER-LGLATTTVRLRDGSGLSRQDLVTPQALVQLLINQT--QKSTGTIYQQSLAVAGRSGTLER--------SFADTPLVGKMRGKTGTLTGVVSLTGYVENQQWGTVAFSFMVN
PBP_BACSU/79-469 PASSLKLLTAAAALSVLGENYSFTTEVRTDGTLKGKKLNGNLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYTYYGAPISALTASPNEDYDAGTVIVEVTPNQKEGEEPAVSVSPKTDYITIKNDAKTTAAGSEKDLTIEREHGTNTITIEGSVPVDANKTKEWISVWEPAGYALDLFKQSLKKQGITVKGDIKTGEAPSS--.SDVLLSHRSMPLSKLFVPFMKLSNNGHAEVLVKEMGKVKK.GEGSWEKGLEVLNSTLPE-FGVDSKSLVLRDGSGISHIDAVSSDQLSQLLYDIQ--DQSWFSAYLNSLPVAGNPDRMVG---GTLRNRMKGTPAQGKVRAKTGSLSTVSSLSGYAETKSGKKLVFSILLN
DAC_ACTSP/96-487 PASNMKLFTAAAALEVLGADHSFGTEVAAESAPGRRGEVQDLYLVGRGDPTLSAEDLDAMAAEVAASGVRTVRGDLYADDTWFDSERLVDDWWPEDEPYAYSAQISALTVAHGERFDTGVTEVSVTPAAE-GEPADVDLGAAEGYAELDNRAVTGAAGSANTLVIDRPVGTNTIAVTGSLPADAAPVTALRTVDEPAALAGHLFEEALESNGVTVKGDVGLGGVPADWQdAEVLADHTSAELSEILVPFMKFSNNGHAEMLVKSIGQETA.GAGTWDAGLVGVEEALSG-LGVDTAGLVLNDGSGLSRGNLVTADTVVDLLGQAG--SAPWAQTWSASLPVAGESDPFVG---GTLANRMRGTAAEGVVEAKTGTMSGVSALSGYVPGPEG-ELAFSIVNN
PBP4_HAEIN/67-449 SASTQKVFTAVAAKLALDDQFQFETALLSNGKIQNGNLDGNLIVRFTGDPDLTRGQLYSLLAELKKQGIKKINGDLVLDTSVFSSHDRGLGWIWNDLTMCFNSPPAAANIDNNCFYAELDA----NKNPGEIVKINVPAQFPIQVFG--QVYVADSNEAPYCQLDVVVHDNNRYQVKGCLARQYKPFGLSFAVQNTDAYAAEIIQRQLRQLGIEFNGKVLLPQKPQQ--.GQLLAKHLSKPLPDLLKKMMKKSDNQIADSLFRAVAFNYYkRPASFQLGTLAVKSILQK-QGIRFGNSILADGSGLSRHNLVAPKTMLSVLEYIA--KNEDKLHLMETFPIAGVDGTISG------RGGLISPPLVKNVIAKTGSLKGVYNLAGFMTNARGEKVAFVQFIN
PBP4_ECOLI/60-446 PASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCFSVSLYS----APKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEP-.GTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFnVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIA--QHDNELNFISMLPLAGYDGSLQY------RAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLS