EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01876 alignment
(12 sequences with 477 bp)


Q9YC00_AERPE/71-219 TATAGGCGTGGCTATGTTGAGGCTTCGACGAGGCGG------GACGTGAGAAGAGCGGCTGAGAAGCTCGCCGGGGTTGTCGACTTCATAGTGGTGAAGCCCCTCACACTTGAGGCGGCTAGATACGCTGCTGCCAACAAGAGG...GTCCACATAATTAGGGTGGACGGGTCAAAC------CTA------TGGGCGGCGGACAGGGGTACGGCTGAGATAATGGCGCAGAGGGGCTGGggcGCCTTGGAAGTATCACTCCGAAACCTCACATTAAACCCGGGTTCTCCAGCGGCC------TGGAGGGCTCTGGCAGTGGTCCTAAGAAGGAGCTTTGCCTAC---GGGGTCCACGTATTTCTGGCGAGCGACGCCGAAGAGCCTCATGAGCTGTGGAGCCCCTACTCCGGCGCCTCGTTAGCAGCCCTGCTAGGCGTGCCGTGGAGCCATGCCATGCTCTATAACAGCGAGGAG
RNP3_ARCFU/29-174 GGCTGTGGAATTGTTATCAGGGCGAACTCTCCGGAG------GAACTGAGAAAAAAGCTCAGAGGCGTTAAAAGGAGGGCCATAGTCGGCATTATC------GGTAAGGAGGCTGTTTGCAGAGAGGCTGTGATGAGAAGAAGG...GTTGACGTTATTCTTGAC---TGGGAGGAC---------------AGGGAGCTGGATTACGCAACGCTGAAGCTCGCTGCCGAGAAGGACGTT...GCAATTGAGCTCAGCTTGTCCAAGTTTCTGAGGACTGAGGGCTACAAGAGAATGCACCTCTTCGAAAGGCTCAGGCAGGAAATAATGGTTATCAGGAAATTT---GACGTGCCATTTATAGTTACAACGGCGGCGGAAAACCAATATGAGCTGAGAACGAGAAAGCAGGTCGAAACCTTCTTTAAGTTCTTTGGGGCCGAAATACCGAAGGCGAGATTGTATGCGCAAAGGCTT
RNP3_PYRAB/52-203 TATGGATTAGTTGCGATTCTACTTGTAAATCCAAGGCTTTCTATAGTTAAAGAGGCCGTTCAAAGATTTAAG---CAGAATTATCTTATCTACGTGGAAAGCAGTGACCTTAGGACTATTAGATATTCAATCGAA---AGAGGG...GTAGACGCTATAATTTCCCCCTGGGTTGGAAGAAAAGAC------CCAGGAATTGATCACACCCTAGCTAGGATGATGGCCAAGAAAGGTGTA...GCTTTGGGATTTTCCCTTAGACCATTGCTTGAGGCATCACCTTATGATAAAGCAAATATCCTAAAATTCATGAGAAAAGCATGGCAACTTACGAATAAGTAT---AAGGTCAAGAGATTCATAACAAGTTCAGCCAACGAGAAATGGCACATTAGATGGCCAAGAGATCTGGCAACTTTAGGTATAATAATTGGGATGGAAGTTCAACAAGCAAAAGCTGCACTTTCAACATAT
RNP3_PYRHO/52-202 TATGGAAAAGTTGCGATACTACTTTCCAACCCCAAGCCTTCACTTGTGAGGGATACAGTTCAGAAGTTTAAA------AGCTATCTAATATACGTTGAAAGCAACGACCTTAGGGTAATAAGGTACTCAATTGAG---AAGGGA...GTTGACGCAATAATTTCCCCCTGGGTAAATAGGAAGGAT------CCCGGGATAGATCATGTTCTTGCAAAGCTAATGGTTAAGAAGAACGTA...GCCTTGGGATTCTCATTAAGACCCCTGTTATACTCAAACCCTTATGAGAGAGCAAATTTATTGAGATTCATGATGAAGGCATGGAAATTGGTCGAAAAATAT---AAAGTCAGAAGATTTCTAACGAGCTCGGCCCAGGAAAAATGGGATGTAAGATACCCAAGGGACTTAATAAGTTTAGGGGTAGTAATAGGAATGGAAATCCCTCAAGCTAAGGCTTCCATTTCTATGTAC
RNP3_METJA/54-205 TATTCTGGAGTTAAAATAAAGACAGAAAGTTCTAAA------CAACTAAGGGATAAGGTAAAAAAGTTTAGAAATAAATGCCACATTATATTGATTGAAGGAGGGGTTTTAAAGATAAATAGGGCTGCAGTTGAGTTGCATGAT...GTTGATATATTATCAACTCCTGAACTTGGAAGGAAAGAT------AGTGGAATAGACCATGTATTGGCAAGATTGGCATCAAATCATAGAGTT...GCTATTGAACTCAATTTTAAGACTCTTTTAAATAAAGATGGCTATGAAAGGGCAAGAACTTTGCTATTTTTTAGAAACAACTTAAAATTGGCTAAGAAGTTT---GATGTGCCTGTTGTTATATCTACAGATGCTGAAAATAAATATCAGATAAAAAATCCTTATGATTTAAGAGCTTTTTTAAATACGTTGGTTGAGCCGTTGTATGCAAAAAAGATTATGGAAACTGCCTAT
RNP3_METTH/69-220 GCCAGGGGTGTAATGATAAATGCATCTGACCCCCGT------GATATGAGGAGATCCGTGAATAAATTCAGGAAAAAGGCTGACGTGATCTATGTCTCAGGGGGCAACCTCAAGGTTAACAGGGCCGCATGTGAGAGCAGGCGG...GTTGATGTCCTCTCAGCACCCTACACTTCAAGGAGGGAC------CCTGGCATCAACCATGTCCTCGCAAGGGAGGCTGCAAGAAACAATGTG...GCTGTTGAACTCCCCCTGGCGGACGTCATCGGGTCCTGGCTCAAGGTACGGGCAAGGGTCCTTGAACAGTTCAGGGAGATCCTGAAACTCCACAGAAAGTTC---GGTTTTCCACTGCTCCTCACCAGCAGGGCCTCCTCCATATATGACCTGAGGACTCCCGGCGATATCATGAACCTCGCAGAATGCTTCGGTATGGAGTCCAGTGAGGCAGAGGAATCCCTCACATCAACC
Q9UXC8_SULSO/34-173 ATAAAAAGAGTTACTATAAAAGTAGAAAATGGAAATCAACTGAAAAAGGCG---TTTAAGAAGCAATTTGTTAGTAAGGAAGTTTTGGTTTTTGTAAAACCCCTTTCAATAGATGCCTTAAAGTACGCTGTTATCAATAAGAGG...GTTAATGCTGTGGTATTAGATGATGATAATATTAGAATA------------TTTAAGAAAAGCATGCTAAATCTGTTAAGATCTTATGGCAAA...TTTGTTGAGATTTCCCTTAAATCTTCT------------------------AGCGGGTTA------------TTATATAACGCTATACTGTTTGCATATAAATGGATACCTAATATTATTTTCTCCTCGTATGCAAGCTCTTTTGATGAAATCTGGAGTCCAATCTCCAAAATAAGTTATTTGACTGTACTGGGAGCTGATGAAGAGGAAGCTTATAAGTTTGTTATAATAAAT
Q9TYZ2_CAEEL/145-296 TTCAGTAGAATTACATTTACTGCAAATGAGCAAGTAGTTATCAATAAAGTT---TTCATTCACCCAACTATTTTGTCCTACGACATCGTTGCCGTTCGCCCGGGCGAGCCATCAGTACTTGACACACTTTCACGAAAAACTGAGcttTTCGATATTATCACAATTGATCATTTGGAGGAAGAAAGGAGAAAATGGTTGTCAGTGTCGAAAGTGATGGATCGAATTCGAAACGATGGAGTT...TTCTACGAAATTGCATATGCAGAGAGTTTGATGCCTGCCACA---CGGAAAAATACATTG------------TTCAACGGCCGAGTCCTGATCAGATCCCTAAAATCGAAGAACATAATCTTCTCATCCGGTGCTGAAACAATGCTTGATCTCCGTTCCCCAGTCGACGTGATGAATATGTCTCTTTTGTGGGGTGTTGCAAATAACGAAGCACGCAAAATGATTTCCGGTTTC
Q9VPM0_DROME/77-226 CTGCAGAGAATCACCATTCTCTACGTAGACGTCAATGTGGCCCACGCGATG---AGTGTCTCCCATAATCTGCGGAAGTTCAATCTCATCGCTGGCCAACCGAAAACAGATGCCGCCCTGACGCACTGCTGCACTGCCTTCAAT...GGGGACTTGATAACTTTTGATCCTGTGGCTGGGTCCCGA------CTCTTGGTAAACCGAAAAGCATACCAGGTGGCAGTCCGTCGGGGCATG...TTCTTCGAAATTAAATACGCTCCATCTATCTGCGATTCGAATAACAGGAAGGACATGATA------------AAGATCGCCCAGAACTATTGCACCAAAGGGAAGTCCAAGAACGTTATCTTCAGCAGTGGTGCGGCGCACGAATTCCAGCTGAGAGGACCTTACGACGTTGCTAATTTGGCCTTTATCTTCGGCCTATCAGAGGACCAAGGGAAAAATGCTGTGGACGGGCAC
RP30_MOUSE/74-224 TTAACTAGATTGACAATTATAGTTACAGATCCAGCTCACTGTAATGTTTTGAGAGCAACTTCGTCAAGGGTCCGGCTGTATGATATTGTTGCAGTCTTTCCAAAGACAGAAAAGCTTTTCCATGTTGCTTGTACACATTTAGAT...GTGGATTTAGTCTGTATAACTGTAACAGAGAAATTACCA------TTTTACTTCAAAAGACCCCCTGTTAATGTGGCAATTGAGCGAGGCCTG...GGCTTTGAACTTGTCTATGGTCCTGCTATCAGAGATGCAACGATGAGAAGGTACACAATC------------TCCAATGCCCTCAATTTGATGCAGATCTGCAAAGGAAAGAATGTAATTCTGTCCAGTGCTGCAGAAAGGCCTTTGGAAATAAGAGGACCATATGACGTGGCAAACTTAGGACTGCTGTTTGGGCTTTCTGAAAATGATGGCAAGGCTGCCGTGTCCACAAAT
RPP1_YEAST/81-228 TACAGCAGGATCACGCTAATTATCGACGATCCATCGAAGGGACAGTCTCTT---------TCCAAGATAAGCCAGGCCTTTGATATTGTAGCAGCATTGCCAATCAGTGAAAAGGGCCTTACTTTATCAACTACCAATCTGGAT...ATTGACTTGTTGACCTTTCAGTACGGGTCGCGCCTGCCT------ACTTTCCTTAAGCATAAAAGCATATGCAGCTGTGTGAACAGAGGAGTA...AAACTTGAAATTGTTTATGGCTATGCTTTGCGTGACGTACAAGCTCGGAGGCAGTTCGTA------------TCCAATGTAAGAAGCGTCATCAGGAGTTCGAGGTCCAGAGGCATTGTTATCGGCAGTGGTGCCATGTCACCACTTGAGTGCCGCAACATATTAGGAGTAACAAGTCTAATCAAGAATTTAGGTCTTCCGAGCGATAGGTGTTCGAAGGCCATGGGAGACCTA
RNP3_SCHPO/65-212 TATTCTCGAATCACTCTAACAATCGAGTCGATGCCTCAAAACAAAGTGTTG---------TCTAACGTAACAAAAGAATTTGATATCTTAGCCATACGACCAATTGGAGACAGATTGCTGCAACAAACATGCAGTGATTTAGAA...TTTGACATTTTGTCCATAGATTTTACTCAGAGACTTCCC------TTTTATTTGAAACATACATTCATGGGTTTGGCTGTTTCAAGAGACATT...GGTATAGAAATATCATATTCTTCTGGACTTCGAGATGTGTCCAACAGGAGAAATTTGATT------------ACAAACGCTACAAGTCTCGTGAGAGCTACTCGGGGTAGAGGGATAATTGTAACAAGCGAAACTAGAACTCCACTTGAGTGTAGGGCCGGTTTTGATGTAATAAATTTAGCGACTTTTTGGGACTTAAAACAAGACCAAGCTAGAAAATCTGTTGGCGAATCT