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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01872 alignment
(27 sequences with 257 aa)


P71968_MYCTU/39-252 TWLRANFISSLDGGATVDGTSGA-....MAGPG---------------DRFVFNLLRELADVIVVGV---GTVRIEGYSGVRMGVVQRQHRQARGQS---EVPQLAIVTRSGRLDRDMA------VFTRTEMAPLVLTTTAVADDTRQRLA...GLAEVIACSGDDPGTVDEAVLVSQLAAR-GLRRILTEGGPTLLGT.FVERDVLDELCLTIAPYVVGGLARRIVTGPGQVL-----.TRMRCAHVLTDDSGYLY
O05684_MYCLE/49-262 VWIRANFITSIDGGATADGRTGA-....MAGPG---------------DRFVFNMLRELADVIVVGA---GTVRIENYSGAHLPVTKRQQRQARGQS---EVPQLAIVTNSGRLDRDMA------VFTRTEIAPLVLTCTETAKKLRTRLA...DLAYVVSCSGDDPSKVDETVVLATLQTR-GLRRVLTEGGPMLLGS.FIQHGMLDELCLTIAPLIVGGRARRIATGPEQLL-----.TRMRCAHVLTDDAGYLY
RIB7_YEAST/30-237 PFVTLTYAQSLDARVSRGPGVRTT....ISHPE---------------TKTMTHYLRHHHDGILVGS---GTVLADNPGLNCKWGPDPAA----------NSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYA...-----ICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQlLLRSDIVNSLIITIGSTFLGSSGTEVSPPQT--------.VNLKDMSWWKGITDVVL
RIB7_SULSO/5-206 PYVIIFSTVSIDGRLATKTGYSE-....LSCPY---------------DKQRQHEIRSEVDAVMVGA---NTVRVDNPSLTVKYGKNR------------RNPIRVVVTRSFNLDPSYK------IFTT--PPSTVIYTSNYESEKVEEFI...RKGVIV------RKFLHLDDLLEDLYDNFNVRRLMVEGGGHLIWW.FIKDNLYDEIRITISPRIFGN--GVSFTQGEGFIGEDSPrLELIDAKICECGNEVHL
O66747_AQUAE/4-215 PYVIIVSEVSVDGKLTLYRGASSKelmsLMDEE---------------AYKYLHEIRAKVDGIMVGC---ETVRTDNPSLTVRYAKG-------------KNPVRIIPCSTANVPLDAN------VLNTKEAPTIIATTERAPKERLEKIK...ELGAEVIVVG--DELVDFDKLLPELYRR-GIKSLMVEGGASINWE.FVRRRVVDEIRLIHLPVIVGGENVPTLVGGEGFKKLKNL.LHLRLRSHFVRGKQLIT
RIB7_METJA/9-218 PYIISNVGMTLDGKLATINNDSR-....ISCEE---------------DLIRVHKIRANVDGIMVGI---GTVLKDDPRLTVHKIKSD------------RNPVRIVVDSKLRVPLNAR------VLNKD-AKTIIATTEDTNEEKEKKIKileDMGVEVVKCG--RGKVDLKKLMDILYDK-GIKSILLEGGGTLNWG.MFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDEC.VKLELKNFYRLGEGIVL
RIB7_METTH/3-210 PYVILNAAMTLDGKIATATGSSE-....ISGEE---------------DLRRVHELRRECDAIMVGI---NTVLADDPRLTVHRVDAAPG----------DNPVRVVVDSMARTPPHFR------VLNDE-APTVIGVSESAPPERVAELR...-KRAEVVVAG--TRRVDLHLLLERLHGM-GIERLMLEGGSTLNYS.MLTGGLVDEVRVCIAPMIVGGRDARTLVDGEGIDEMADA.IRLELKRSYTLGEDLIV
RIB7_ARCFU/3-213 PYVFVNVAASLDGKISDESRKQLR....ISCEE---------------DLRIVDRLRAESDAIMVGI---GTVLADDPRLTVKSAELREKRQKDGKE---PNPLRVVVDSRCRVPLTAR------ILNDE-ARTLVAVSRIAPEEKVREVK...-KVAEVAVFG--EERVELSALLEFLHRK-GVRRLMVEGGGTLISS.LISQNLVDEIRIYYGPIFIGGRDSPTVCDGESFL-----.KKCRIEKIERIGEGFAV
RIBD_ACTPL/159-368 PYVLMKYAMTADGKIATGSGESKW....ITGES---------------ARARVQQTRHQYSAIMVGV---DTVLADNPMLNSRMPNA-------------KQPVRIVCDSQLRTPLDCQ------LVQTAKEYRTVIATVSDDLQKIEQFR...PLGVDVLVCKARNKRVDLQDLLQKLGEM-QIDSLLLEGGSSLNFS.ALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQA.VKLKLKSTELIGEDILL
RIBD_AQUAE/150-351 PYITLKWAQTLDGKLATLTGSSKW....ITSKE---------------SRKVAHILRREATAVLVGV---NTVIKDDPHLTVRFVPTE------------KQPVRIILDPELEVPLSAK------VLNTEEAPTIVITKK--ENEKAEKLK...EKGVQVLILK----GFNLKNILKKLKEL-EIMHLMVEGGPRTLTS.FLKEGFFDRIVVFIAPKIMGE---GLSIGDLGIRSIEES.LKVRKKKVENLGEDLVI
RIBD_BACSU/146-354 PYVTLKAAASLDGKIATSTGDSKW....ITSEA---------------ARQDAQQYRKTHQSILVGV---GTVKADNPSLTCRLPNVT------------KQPVRVILDTVLSIPEDAK------VICDQIAPTWIFTTARADEEKKKRLS...AFGVNIFTLE--TERIQIPDVLKILAEE-GIMSVYVEGGSAVHGS.FVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDV.PLLQFTDITQIGRDIKL
RIBD_BACAM/146-354 PYVTLKAAASLDGKTATETGDSKW....ITSEA---------------ARLDAQQYRKSHQRILVGA---GTVKADNPSLTCRLPDAV------------KQPVRVILDTKLTVPETAN------VLTDGAAPTWIFTAAGSDVRKKDRLT...ALGIKVFTLE--TDRIHIPEVLSILAEN-GIMSVYVEGGASVHGS.FVKAGCFDELHFYFAPILIGGTLAPSLISGEGFQSMKDV.PHLQFTQITQIGPDIKL
RIBD_ECOLI/147-362 PYIQLKLGASLDGRTAMASGESQW....ITSPQ---------------ARRDVQLLRAQSHAILTSS---ATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR-------IVQQPGETWFARTQEDSREWPETVR...-----TLLIPEHKGHLDLVVLMMQLGKQ-QINSIWVEAGPTLAGA.LLQAGLVDELIVYIAPKLLGS-DARGLCTLPGLEKLADA.PQFKFKEIRHVGPDVCL
RIBD_HAEIN/152-365 PFVQLKLAMSLDGRTAMASGESKW....ITGPD---------------ARSDVQKMRAKSSALLSTS---TTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHRIQPTHK-------LFLTHSPVWLVSSEPRDLTGFPDFCeqiIFPKENL----------LKELMRELGKR-QINTLWVEAGANLSGS.LIDAKLVDELIIYIAPKLLGD-NARGLCQLPNLTKLADA.PLWQLNELEQIGDDIKL
RIBD_CHLTR/152-363 PWVVMKTAASLDGQTADRGGSSQW....ISGEL---------------ARADVGKLRAESQAIIVGA---RTVCLDNPRLSARFPHGDLYE---------RQPLRVVVDSRGTVPLESR------VFDLSSGSTLFATTQQCPKEYIQKLK...DLGVEVWESS--SHQVDLKGLLRYLAER-GCLQVLVEGGAQLHSA.FWQQKLVNAGVIYWGPKFLGDQGQPMLRDLQLSLVTAEH.VRITETSLVRDSVKTCF
RIBD_MYCTU/154-334 PHVTWKYATSIDGRSAAADGSSQW....ISSEA---------------ARLDLHRRRAIADAILVGT---GTVLADDPALTARLADGSLAP---------QQPLRVVVGKR-DIPPEAR------VLNDEARTMMIRTHE-----------...-----------------PMEVLRALSDR---TDVLLEGGPTLAGA.FLRAGAINRILAYVAPILLGG--PVTAVDDVGVSNITNA.LRWQFDSVEKVGPDLLL
RIBD_CORAM/159-333 PHVTLKFAQTIDGFTAAADGTSQW....ITGEM---------------ARDYVHADREHRDAIIIGT---GTALIDNPSLTARYPDGTQRE---------HQPRRVVIGRRN-------------IADAGDAASNLNRLGF----------...------------EQYATIDEALAELYAT-GARDVLVEGGAGLASG.FANQGLVDWLQVYQAPLLLGE----------GISVLAHP.LTNTLKGASALCPRAAS
RIBD_SYNY3/148-353 PFGIFKYAMTLDGKIATAQAHSSW....VTSSS---------------ARHWVHQLRSQCQAVIIGG---NTVRRDNPLLTNHGVGE-------------VNPLRVVLSRSLDLPIEAQ------LWDQDVAKTLVITEKTCDRNTLSHLE...KLEVETLVLE----QLTPLAVMEELYQR-NCLQVLWECGGILAAE.AIAMGTVQKVHAFLAPKIIGGVAAPTPVGELGFQQMTQA.LNLTDLHCQAIGPDWLF
Q9XBD7_AMYOR/2-196 ATVNCNITISADGYSAGHNQTEQRpfgdDGGDGTGDKLHAWMFDSPEENQAEIDQMTA-ATAFIMGRNMFGPVRGEWDRPWNGWWGDNPP----------FHGPVFVLTHHERDPQPMDGGTTYHFVTDG---------------------...-----------------IESALEQARAAAGDGEVTILGGATTINQ.YLAAGLIDEVRLHIVPFTLGA--GTRLFEGVPP------.LKLEQVKSRATTSVTHV
Q98JM8_RHILO/2-188 KKLILQMQMSVDGFVGANDDHRWQ....LWEWGHDIGWDEE-------LKQDFNAVFAGIDTILLSR---KMAEEGYLTHWGNAAKKFPADPFYAFAQRIVEVRKVVPSDRLK----TSRWERSTVVSGD---------------------...-----------------LPREVNALKAG-EGGDIIVFGGAGFASS.LIAAGLVDEFQLFVNPAVLGA--GRRIFDQGGFRN----.--LRLLGSKAYACGMVV
Q98LQ3_RHILO/2-178 AKIVYSMLTSLDGYIAGPDGDIGL....PVPETE--------------LHQHFNDMMRQASAVLAGRRMYETMRFWDS----PDRETGATEVERDFADAWRDTPKIVFSTTLR-----QVGSNARLVNGD---------------------...-----------------AETAVRSLKTK--TDGLVILGGADLAAD.LTRAGLIDEYRLYMHPVVLGG--GKPYFQSGLSLA----.--LKPLGTESLPQGVTL
Q98I97_RHILO/10-193 RKIIAATFVSLDGVMQAPGGPEED....PVGGFKFGGWTFHYFDEV--GGAAMDELFSKPFTLLLGRRTYDIFTAYWP------------YQKDPIADAFNPATKYVATHRPD----TLTWQNTQWLGED---------------------...-----------------IVAALRRLSKQ-DGPDLLIQRSADLIQT.LLANGLIDEIRLMIFPLLLGK--GKRLFGDGAMP-----.AAFKLVKSQTSSTGVII
Q983M6_RHILO/2-170 RKLIVTEFISVDGIAEVEK-----....----LPGVTWNDE-------MNRFKEDELADSGAMLLGRTTYEIFAGSWP------------EETGDFADRFNALPKYVASTSLK----ALDWKPAELLTGS---------------------...-----------------LPEAVRTLKQG-SGGNIYVHGSLSLAQE.LLRHGLVDRVRLLSYPGAVGQ--GKPLFPQGEQVA----.--LELISATPFSNGVVA
Q9XBC6_AMYOR/17-198 RTLISTSFVSLDGKLDPTGGDPA-....----LHSTKWTFKTVDFLPEAYEIKGREQEEAGALLLGRASYELFAPVWP--------------GMAEFARYKGLPKYVVSTTLTENDLVDDWGDNTILR-----------------------...-----------------SLDEVAELKQT-EGDPILVHGSATLNRA.LHEAGLIDRYHLLVFPILLGA--GKPLFSDADLPA----.TRLKLVEHEVYPNGIQK
Q9L023_STRCO/25-206 RTLISTAFVSLDGVVEAPGGEPG-....----YRNTGWTVKLVDFLPEAYEIKGREQEEASALLLGRVSYEAFSPVWP--------------DMAEFPGYRAMPKYVVSTTLAEDDLVTNWGETTILR-----------------------...-----------------SLDEVAALKEG-EGGPIIVHGSAALNRS.LSDAGLIDRYHLLVFPLLLGA--GKRLFSDSDKDA----.RKLRLVEHEVYANGIQK
Q9F3D0_STRCO/2-176 ASLMVDFIISLDGYAAADGWPGFW....GMEGPEYLAW--------------LDGDAEKQHTSLMGATTYRLMSGFAR-----------EMPDDPGFEGITAMPKVVFSSTLR---TPLSWDNTELVPGD---------------------...-----------------PVPAVRDMKRH-GTRPLRTLGSLTLCRS.LLRAGLVDRFRVVVFPVITGATGRERIFDQYPDVT----.--LDLVGSRTFDGRLQL
Q98HZ2_RHILO/2-179 RKLIVFNSISLDGYFTDRHGAMDW....AHSQDPE-------------WNAFVADNAKGGGMLVLGRVTYDLMIQFWP-------TPMAAQIAPVVAERMNAMPKVVFSRTLD----TVSWNNTELVKSG---------------------...-----------------PAAKLRELKQQ-PGNHMTILGSGNLVAQ.LAEENLIDEYQFVIVPIMLGA--GRTMFEGIGNR-----.LNVKLARSQAFGNGNVF