EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01741 - MscL)
Large-conductance mechanosensitive channel, MscL
(Pfam reference: accession no. PF01741)
(Interpro reference: accession no. IPR001185)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
8 sequences @ 153 aa
(ave. pairwise identity: 0.48)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 3.86)
nucleotides
(available for above)
8 sequences @ 459 bp
(ave. pairwise identity: 0.53)
New Hampshire format
(total tree length: 3.21)
amino acids, restricted set
(corresp. to available nt seqs)
8 sequences @ 153 aa
(ave. pairwise identity: 0.48)
New Hampshire format
(total tree length: 3.86)