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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01688 alignment
(12 sequences with 408 aa)


VGLI_VZVD/4-337 IQCLISAVIFYIQVT----NALIFKGDHVSLQVNSSLTS-ILIPMQ.NDNYTEIKGQLVFIGEQLPTGTNYSGTLELLYADTV.AFCFRSVQVIRYDGCPRIRTSAFISCRYKHSWHYGNSTDRISTEPDAGVMLKITKPGINDAGVYVLLVRLDH.SRSTDGFILGVNVYTAGS----HHNIHG-..VIYTSP----------SLQNGYSTRAL----FQQARLCDLPATPKG---.SGTSLFQHMLDLRAGKSLEDNP-----------------WLHEDVVTTETKSVVKEGIENHVYPTDMSTLPEK--........--SLNDPPENLLIIIPIVASVMI-.-LTAMVIVIVISVKRRRIKKHPIY---RPNTKTRRGIQNAT------PESDVMLEAAIAQLA
VGLI_CHV9D/7-336 TASIMRYLMVFMLFGIQCAAAIIYRGNYISLYVNSSATSIFLKG--.NNNDASIRGRFLFIGDQFPVTNTYNVTVELLHVNQT.TLCLQPLYRVMYGECPRIRTGAIIACRVKRSWH--YENATQLTDPNVEIIFKMNNTKVEDAGIYLLVVQLDY.TSLFDIFFVSLNVY--------PKQDTS-..NEDVNY-----------FPPVYSPS----HILNTFKICHKFPVHNG---.MEQSILQHIVTSDVDTETENLS--------------------WQKDDLGSTQKPRKNFN-PDVKVNVTHETRK--........-TLMESSADVFMIAVPITASLLV-.--ILAIIIVVTVGIYRRRSSEKRKIYRPKRTKEQASTEKRE-----RSESDVLLEAAVARLE
VGLI_PRVRI/9-350 TRLPAGLLLAALTLA---ALTPRVGGVLFRGAGVSVHVAGSAVLVPgDAPNLTIDGTLLFLEGPSPSN--YSGRVELLRLDPK.RACYTREYAAEYDLCPRVHHEAFRGCLRKR----EPLARRASAAVEARRLLFVSRPAPPDAGSYVLRVRVNG.TTDLFVLTALVPPR---GRPHHPTPSSA-..-DECRP--VVG--SWHDSLRVVDPAED---AVFTTPPPIEPEPPTT---.PAPPRGTGATPEPRSDEEEEDEEG------ATT------AMTPVPGTLDANGTMVLNAS-VVSRVLLAAANAT--........-AGARGPGKIAMVLGPTIVVLLI-.-FLG--GVACAARRCARGIASTGR---DPGAARRSTRRPRG----ARPPTPSPGRP-SPSPR
VGLI_BHV1S/3-361 CLLLWMVVLAARAAP---ARSLVYRGEAVGLRADGPVAF-AVHP--.TDATLALRGRLIFLEHQLPAGRRYNGTVELLRYHAA.GDCFVMLQTTAFASCPRVANNAFRSCLHADTRP-ARSERRASAAVENHVLFSIARPRPIDSGLYFLRVGIYG.GTAGSERRRDVFPL-AAFVHSFGEPGDPE..AAARTP--APSRQSRPAASGLTSSASL-YDRALARSPQAPPPRPAP---.PRAARAGPRRPERVDETTEVEAATRAGSAFALT-------TPPAGPTASPAASPSRAFS-AAAPAAAAQPAGD--........-TPARFRRQLASILVPLCVLVLL-.-LLALCAATVNCALRRRLLPCSRR---VYKPRTCAACGSGTCA--GRPPCRGAAP--SAPAT
O41525_9ALPH/14-344 TRLLITMFLPILFLFLYGVNGFVYKGTYISMFLNTSSGF-SIFP--.-DDKFIVSGRLLFLDDQHLSVNNYSGTIEFIHFN--.NSCYTVYQTIEYFSCPRIFNNAFRSCLKKVSKH-HESQLRINSSIENGVLLEITNPKPNDSGVYFIRVQLE-.NNKTDVFGIPAFIY--------SFNMSN-..--EVNK---------SNFDDVTTSLY------TSSHPSSQTITPIY---.-LNEKHEPICHTVKKDENVYEL--------LLG-------LHGNITDDIFLDEDSELLKRVNIPTTTNNYIFKP-........-YLDQRNRKFLIIVISISIILLI-.-LLVLIGSIINNIIR-RHFSSSRR---IYRPKGNSESENIELT-CGENSVNKNNPLPKKPNR
Q66931_FHV1/2-363 SSIAFIYILMAIGT----VYGIVYRGDHVSLHVDTSSGF-VIYP--.TLENFTIYGHLIFLDDQPLPVNNYNGTLEIIHYNHH.SSCYKIVQVIEYSSCPRVRNNAFRSCLHKTSMH-QYDQLSINTSVETGMLLTITSPKMEDGGIYALRVRFNH.NNKADVFGLSVFVY---SFDTRGHRHHA-..DENLNGEILTTPSPMETYVKVNTPIYDHMVTTQTTSNKSMESEPSN---.--TSISCHTFQNDPNEGETLYTHLLN----IAG------NITYDDMVMDGTTLKPRLID-MGLNLSVTSSFKNET........TQKWTPDRKVGFVIVISIAVLLL-.--LAVIGSIINSAIRKHIMVCAGRRIYIPNNDGRPSTEMTRFTRQTKPSNSSSKSLLDVPRS
VGLI_HHV23/3-352 GRSLQGLAILGLWVC---ATGLVVRGPTVSLVSDSLVDAGAVGPQGfVEEDLRVFGELHFVGAQVPHTNYYDGIIELFHYPLG.NHCPRVVHVVTLTACPRRPAVAFTLCRSTHHAH-SPAYPTLELGLARQPLLRVRTATRDYAGLYVLRVWVGS.ATNASLFVLGVALS-ANG--TFVYNGSD-..YGSCDPAQLPFSAPRLGPSSVYTPG-----ASRPTPPRTTTS-PSS---.PRDPTPAPGDTGTPAPASGER---------APP------NSTRSASESRHRLTVAQVIQ-IAIPASIIAFVFLG-........-SCICFIHRCQRRYRRPRGQIYN-.-PGG-VSCAVNEAAMARLGAELRS---HPNTPPKPRRRSSSST--TMPSLTSIAEE-SEPGP
VGLI_HHV11/3-368 CRPLQGLVLVGLWVC---ATSLVVRGPTVSLVSNSFVDAGALGPDGvVEEDLLILGELRFVGDQVPHTTYYDGGVELWHYPMG.HKCPRVVHVVTVTACPRRPAVAFALCRATDSTH-SPAYPTLELNLAQQPLLRVQRATRDYAGVYVLRVWVGD.APNASLFVLGMAIA-AEG--TLAYNGSA-..YGSCDPKLLPSSAPRLAPASVYQPA-----PNQASTPSTTTSTPSTTIPaPSTTIPAPQASTTPFPTGDPKPQPPGV-NHEPPS-----NATRATRDSRYALTVTQIIQ-IAIPASIIALVFLG-........-SCICFIHRCQRRYRRSRRPIYSPqMPTG-ISCAVNEAAMARLGAELKS---HPSTPPKSRRRSSR-T--PMPSLTAIAEE-SEPAG
Q69370_9ALPH/2-382 GRLLGFLLASALWAR---SRVVVVRGPTISLVSDSLLAAGPVGPDGrLPGDLEVPGEFHFLGPQVPRVAYYDGAVELFHYPPV.DRCPRVVLVEELTACPRRHAVAFALCRSTRRTQ-SPAYANLTLDLARRPLLRARGFADAVVGLYVARVWVEG.ATNASLFPLDLAAFPAEGRPTEPPPGGETpvDARCDP-DAPLRAPRLGPADVFVPATP-IPPARTAEPPEATPPPARTAE.PPEATPPPVSPNPATPEAAEVGETEETPDPATPGGGRATSASPAPEASRYELTATRIVQ-IAIPALIIACVALG-........-SCSCCLGRRCRRRRPHPARIYRPpSPVAPSISAVNEAALARLGDELKR---PPESPRRAKRRPSQ-T--AVPSLTAISEE-SEAPA
Q88524_MEHV1/8-337 CMVCVTLILFCIIIK---TQCMVYRGSLVSTTVDQSAQI-AFFG--.IDTVVNLYGKVLFMGDQYLEEI-YSGTMEILKWNQA.NRCYSIAHATYYADCPIISSTVFRGCRDAVVY--TRPHSRIHPQYRNGLLLTIIEPRMEDSGIYYIRTSIDG.FNKSDYARTSIFVC----------NGSS-..-GSCSN----------PRQKVSDEMCIPHVNRIAFERYLTLHVGRLP--.YGDLTLQQIRKDMTTTAPTYRT---------IR------RTTVNEGLLTAKTSPDIDLNATNLPLPISNYTDY--........--MSVIWRRVALRRIYAYLVIAI-.--IALLIVTVCSAHKRGSCSRRRR---IYIGNEPTTLTSIT----NGNFQEKETKN-VPSDI
Q69287_MEHV1/1-333 MYVLQLLFWIRLFRG---IWSIVYTGTSVTLSTDQSALV-AFRG--.LDKMVNVRGQLLFLGDQTRTSS-YTGTTEILKWDEE.YKCYSVLHATSYMDCPAIDATVFRGCRDAVVY--AQPHGRVQPFPEKGTLLRIVEPRVSDTGSYYIRVSLAG.RNMSDIFRMVVIIR----------SSKS-..-WACNH----------SASSFQAHKCIRYVDRMAFENYLIGHVGNL---.LDSDSELHAIYNITPQSISTDIN----------------IVTTPFYDNSGTIYSPTVFNLFNNNSHVDAMNSTG-........-MWNTVLKYTLPRLIYFSTMIVL-.----CIIALAIYLVCERCRSPHRR---IYIGEPRSDEAPLITSAVNESFQYDYNVKETPSDV
Q67645_9ALPH/2-340 ASLLGTLALLAATLAPFGAMGIVITGNHVSARIDDDHIV-IVAP--.-RPEATIQLQLFFMPGQRPHKP-YSGTVRVAFRSDItNQCYQELSEERFENCTHRSSSVFVGCKVTEY---TFSASNRLTGPPHPFKLTIRNPRPNDSGMFYVIVRLDDtKEPIDVFAIQLSVYQFAN-TAATRGLYS-..KASCRT----FGLPTVQLEAYLRTEES--WRNWQAYVATEATTTSA---.-EATTPTPVTATSASELEAEHFT-----------------FPWLENGVDHYEPTPANEN-SNVTVRLGTMSPT--........-----LIGVTVAAVVSATIGLVI-.---VISIVTRNMCTPHRKLDTVSQ---DDEERSQTRRESRK----FGPMVACEINKGADQDS