EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01514 - YscJ_FliF)
Secretory protein of YscJ/FliF family
(Pfam reference: accession no. PF01514)
(Interpro reference: accession no. IPR006182)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
21 sequences @ 231 aa
(ave. pairwise identity: 0.29)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 14.11)
nucleotides
(available for above)
20 sequences @ 693 bp
(ave. pairwise identity: 0.41)
New Hampshire format
(total tree length: 9.70)
amino acids, restricted set
(corresp. to available nt seqs)
20 sequences @ 231 aa
(ave. pairwise identity: 0.29)
New Hampshire format
(total tree length: 13.58)