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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01473 phylogeny
for restricted amino acid alignment


 
(((((((((((((((((((Q97K42_CLOAB/1867-1885,Q97K42_CLOAB/2631-2649),Q97K42_CLOAB/2208-2226),(((((Q97K42_CLOAB/2490-2508,Q97K42_CLOAB/2309-2327),((Q97K42_CLOAB/558-576,(Q97K42_CLOAB/2611-2629,(Q97K42_CLOAB/2329-2347,Q97K42_CLOAB/2510-2528))),Q97K42_CLOAB/358-376)),Q97K42_CLOAB/418-436),Q97K42_CLOAB/706-724),(Q54447_STRMU/275-293,((Q97K42_CLOAB/686-704,Q97K42_CLOAB/2289-2307),Q97K42_CLOAB/2712-2730)))),((Q97K42_CLOAB/2591-2609,Q8XMR3_CLOPE/198-216),(((((Q97K42_CLOAB/1586-1604,Q97K42_CLOAB/2470-2488),Q8XMR3_CLOPE/58-76),(Q97K42_CLOAB/1378-1396,(Q97K42_CLOAB/765-783,(Q97K42_CLOAB/2671-2689,Q97K42_CLOAB/2752-2770)))),(((((Q97K42_CLOAB/1299-1317,Q97K42_CLOAB/278-296),(((Q46342_CLOSO/1988-2006,Q97K42_CLOAB/2349-2367),Q97K42_CLOAB/2024-2042),(Q97K42_CLOAB/1051-1069,(TOXB_CLODI/1986-2004,Q9EXR0_CLODI/1988-2006)))),Q97K42_CLOAB/338-356),Q97K42_CLOAB/398-416),Q8XMR3_CLOPE/258-276)),(Q97K42_CLOAB/2389-2407,(Q97K42_CLOAB/973-991,((Q8XMR4_CLOPE/607-625,Q97K42_CLOAB/846-864),(Q97K42_CLOAB/518-536,Q97K42_CLOAB/666-684))))))),Q46034_CLODI/1968-1986),((Q97K42_CLOAB/479-497,Q8DQ62_STRR6/360-378),Q8XMQ8_CLOPE/63-80)),(((Q46288_CLOPE/15-33,Q8XMQ8_CLOPE/82-100),(Q46288_CLOPE/35-53,(((Q8XMR2_CLOPE/156-174,Q46288_CLOPE/55-73),(((Q8XMR3_CLOPE/178-196,(Q8XMR3_CLOPE/98-116,(Q8XMR4_CLOPE/627-645,Q8XMR4_CLOPE/707-725))),Q8XMR3_CLOPE/218-236),(Q8XMR3_CLOPE/138-156,(Q8XMR2_CLOPE/76-94,Q8XMR2_CLOPE/116-134)))),(Q97SH5_STRPN/226-244,((Q8XMR2_CLOPE/136-154,Q8XMR3_CLOPE/158-176),O05168_STRPN/216-234))))),(((((Q8DMZ4_STRR6/392-410,(((((((O05168_STRPN/236-255,((O30874_STRPN/605-623,Q8DMZ4_STRR6/372-390),((Q45820_CLOAB/512-531,(Q45819_CLOAB/512-530,Q45822_CLOAB/495-513)),(Q45820_CLOAB/533-551,Q45820_CLOAB/553-571)))),Q45819_CLOAB/532-550),(Q9KGY7_STRPN/192-211,Q8DQ62_STRR6/461-479)),(((Q8DQ62_STRR6/521-539,Q8DQ62_STRR6/421-439),O05166_STRPN/469-487),(LYTB_STRPN/87-105,Q8DNH0_STRR6/42-60))),((ALYS_BPDP1/238-257,(ALYS_STRPN/259-278,Q53275_STRPN/259-278)),LYCA_BPCP1/282-301)),Q9KGY8_STRPN/113-131),((((Q97K42_CLOAB/826-844,Q97K42_CLOAB/1071-1089),Q97K42_CLOAB/298-316),(LYCA_BPCP1/262-280,((Q97K42_CLOAB/953-971,Q97K42_CLOAB/1807-1825),Q9KGY8_STRPN/133-151))),Q8DQ62_STRR6/441-459))),(((O30874_STRPN/626-644,(Q8DP99_STRR6/92-110,O34097_STRPN/617-635)),Q8KSD4_STRPN/201-219),(Q8XMW8_CLOPE/98-116,((O05166_STRPN/689-707,Q8DMZ4_STRR6/412-430),(O05168_STRPN/257-275,Q9KGY8_STRPN/173-191))))),(((Q45819_CLOAB/552-570,(((Q9KGY9_STRPN/157-175,Q45820_CLOAB/593-611),Q8XMW8_CLOPE/78-96),(Q9KGY8_STRPN/153-171,Q45820_CLOAB/613-631))),(Q45821_CLOAB/504-522,Q45821_CLOAB/544-562)),(O30874_STRPN/465-483,((O34097_STRPN/576-594,Q9KK54_STRPN/580-598),Q8DP99_STRR6/71-89)))),(Q97SI4_STRPN/301-319,((Q46288_CLOPE/75-93,Q9KGY8_STRPN/93-111),(((O66380_ERYRH/467-485,(O66380_ERYRH/487-505,O66380_ERYRH/447-465)),ALYS_STRPN/239-257),Q8DR52_STRR6/239-258)))),(Q8DR52_STRR6/219-237,Q8DR40_STRR6/3-21)))),Q46149_CLONO/1891-1909),Q8XMR2_CLOPE/56-74),(Q8DMZ4_STRR6/352-370,((Q8XMR2_CLOPE/96-114,(Q8XMR3_CLOPE/78-96,((Q8XMR4_CLOPE/687-705,(Q8XMR3_CLOPE/278-296,(Q8XMR4_CLOPE/647-665,Q8XMR4_CLOPE/767-785))),Q8XMR2_CLOPE/176-194))),(O30874_STRPN/445-463,(ALYS_BPDP1/218-236,Q9AF60_9CAUD/218-236))))),Q8XMR2_CLOPE/216-234),((((Q8KZL5_9STRE/1227-1245,O68542_STRSL/1365-1383),(((GTFB_STRMU/1280-1299,((Q8KZL5_9STRE/1533-1551,(GTF1_STRDO/1573-1591,Q9WXJ5_9STRE/1446-1464)),GTFC_STRMU/1373-1392)),Q55265_STRSL/1324-1344),(((GTFD_STRMU/1375-1394,(GTFD_STRMU/1247-1266,((Q8DUW9_STRMU/215-233,Q8G9Q2_LEUME/1558-1577),((Q8DUW9_STRMU/150-169,GTFD_STRMU/1311-1330),(GTF1_STRDO/1217-1236,GTF1_STRDO/1282-1301))))),Q54178_STRGN/1358-1377),Q55265_STRSL/1512-1531))),(GTFS_STRDO/1074-1092,Q9WXJ4_9STRE/1046-1064)),((Q8RJT8_STRPN/218-237,(ALYS_STRPN/218-237,ALYS_BPDP1/197-216)),((GTFS_STRDO/1344-1362,Q00600_STRSL/1298-1316),((LYCA_BPCP1/221-239,(ALYS_STRPN/197-215,ALYS_BPDP1/174-194)),(Q8DP07_STRR6/153-171,Q9ZFN0_9FIRM/246-264)))))),((Q9ZFN0_9FIRM/267-285,Q9ZFN1_9FIRM/289-307),((((Q9ZFN0_9FIRM/288-306,(Q9ZFN0_9FIRM/330-348,Q9ZFN2_9FIRM/14-32)),Q54447_STRMU/160-178),Q7UUN6_RHOBA/156-175),((LYCA_BPCP1/242-260,Q8DQ62_STRR6/381-399),(((LYCA_BPCP1/200-218,Y812_ARCFU/125-144),(LYCA_BPCP1/304-322,((Q53275_STRPN/281-299,ALYS_STRPN/281-301),ALYS_BPDP1/260-278))),(((LYTB_STRPN/251-271,((LYTB_STRPN/148-166,LYTB_STRPN/66-84),LYTB_STRPN/209-227)),(Q8CZ16_STRR6/132-152,Q8DP07_STRR6/130-150)),LYTB_STRPN/230-248)))))),Q8CZ16_STRR6/94-112),(((Q48756_LEUME/921-939,(O68542_STRSL/1156-1175,(GTFD_STRMU/1117-1136,((((Q8G9Q2_LEUME/1232-1251,Q55265_STRSL/1192-1211),(GTFB_STRMU/1088-1106,GTFC_STRMU/1117-1135)),((Q54178_STRGN/1163-1182,Q8G9Q2_LEUME/1170-1188),Q9RE05_LEUME/1327-1346)),(O52224_LEUME/1164-1183,Q8KZL5_9STRE/1092-1110))))),Q9RE05_LEUME/1381-1400),(Q00599_STRSL/1115-1133,(Q00599_STRSL/1252-1270,Q9WXJ5_9STRE/1248-1266)))),Q8XMQ8_CLOPE/43-61),Q55265_STRSL/1389-1407),(Q00599_STRSL/1511-1530,Q00600_STRSL/1427-1446)),Q8KZL5_9STRE/1381-1400,Q8KZL5_9STRE/1468-1487);
(((((((((((((((((((Q97K42_CLOAB/1867-1885:0.19092,Q97K42_CLOAB/2631-2649:0.26211):0.10516,Q97K42_CLOAB/2208-2226:0.10786):0.05677,(((((Q97K42_CLOAB/2490-2508:0.24710,Q97K42_CLOAB/2309-2327:0.23973):0.12411,((Q97K42_CLOAB/558-576:0.39150,(Q97K42_CLOAB/2611-2629:0.25301,(Q97K42_CLOAB/2329-2347:0.04192,Q97K42_CLOAB/2510-2528:0.23010):0.13884):0.03224):0.00000,Q97K42_CLOAB/358-376:0.22602):0.11032):0.00000,Q97K42_CLOAB/418-436:0.35506):0.00000,Q97K42_CLOAB/706-724:0.33794):0.06740,(Q54447_STRMU/275-293:0.40364,((Q97K42_CLOAB/686-704:0.12218,Q97K42_CLOAB/2289-2307:0.46026):0.09190,Q97K42_CLOAB/2712-2730:0.30020):0.23214):0.00000):0.05433):0.05743,((Q97K42_CLOAB/2591-2609:0.26098,Q8XMR3_CLOPE/198-216:0.22368):0.06286,(((((Q97K42_CLOAB/1586-1604:0.00000,Q97K42_CLOAB/2470-2488:0.35703):0.04903,Q8XMR3_CLOPE/58-76:0.59619):0.26414,(Q97K42_CLOAB/1378-1396:0.12343,(Q97K42_CLOAB/765-783:0.28854,(Q97K42_CLOAB/2671-2689:0.18304,Q97K42_CLOAB/2752-2770:0.18967):0.07588):0.03129):0.08856):0.08915,(((((Q97K42_CLOAB/1299-1317:0.07968,Q97K42_CLOAB/278-296:0.43977):0.08449,(((Q46342_CLOSO/1988-2006:0.19961,Q97K42_CLOAB/2349-2367:0.15812):0.14259,Q97K42_CLOAB/2024-2042:0.15724):0.05745,(Q97K42_CLOAB/1051-1069:0.19020,(TOXB_CLODI/1986-2004:0.16776,Q9EXR0_CLODI/1988-2006:0.07987):0.27495):0.00000):0.07586):0.05397,Q97K42_CLOAB/338-356:0.15652):0.09742,Q97K42_CLOAB/398-416:0.08528):0.07783,Q8XMR3_CLOPE/258-276:0.28940):0.05830):0.05869,(Q97K42_CLOAB/2389-2407:0.21608,(Q97K42_CLOAB/973-991:0.07828,((Q8XMR4_CLOPE/607-625:0.30740,Q97K42_CLOAB/846-864:0.09128):0.03791,(Q97K42_CLOAB/518-536:0.05306,Q97K42_CLOAB/666-684:0.32306):0.06337):0.07468):0.04209):0.15394):0.00000):0.00000):0.00510,Q46034_CLODI/1968-1986:0.56240):0.10743,((Q97K42_CLOAB/479-497:0.52738,Q8DQ62_STRR6/360-378:0.25206):0.27787,Q8XMQ8_CLOPE/63-80:0.19703):0.29166):0.06996,(((Q46288_CLOPE/15-33:0.18784,Q8XMQ8_CLOPE/82-100:0.07663):0.11467,(Q46288_CLOPE/35-53:0.05203,(((Q8XMR2_CLOPE/156-174:0.11783,Q46288_CLOPE/55-73:0.36633):0.00328,(((Q8XMR3_CLOPE/178-196:0.29371,(Q8XMR3_CLOPE/98-116:0.09427,(Q8XMR4_CLOPE/627-645:0.21398,Q8XMR4_CLOPE/707-725:0.45497):0.15050):0.06822):0.04556,Q8XMR3_CLOPE/218-236:0.09495):0.07120,(Q8XMR3_CLOPE/138-156:0.37357,(Q8XMR2_CLOPE/76-94:0.13518,Q8XMR2_CLOPE/116-134:0.14664):0.09511):0.07650):0.08400):0.21852,(Q97SH5_STRPN/226-244:0.24413,((Q8XMR2_CLOPE/136-154:0.39418,Q8XMR3_CLOPE/158-176:0.41926):0.13173,O05168_STRPN/216-234:0.15596):0.22514):0.15634):0.00000):0.05423):0.05948,(((((Q8DMZ4_STRR6/392-410:0.12073,(((((((O05168_STRPN/236-255:0.38260,((O30874_STRPN/605-623:0.13907,Q8DMZ4_STRR6/372-390:0.28495):0.05006,((Q45820_CLOAB/512-531:0.44303,(Q45819_CLOAB/512-530:0.12197,Q45822_CLOAB/495-513:0.40362):0.04660):0.09710,(Q45820_CLOAB/533-551:0.00000,Q45820_CLOAB/553-571:0.26797):0.07558):0.13551):0.09109):0.01161,Q45819_CLOAB/532-550:0.19070):0.17142,(Q9KGY7_STRPN/192-211:0.57795,Q8DQ62_STRR6/461-479:0.21288):0.19961):0.04138,(((Q8DQ62_STRR6/521-539:0.47070,Q8DQ62_STRR6/421-439:0.38826):0.12447,O05166_STRPN/469-487:0.04330):0.18430,(LYTB_STRPN/87-105:0.62276,Q8DNH0_STRR6/42-60:0.37353):0.11129):0.09253):0.07430,((ALYS_BPDP1/238-257:0.46363,(ALYS_STRPN/259-278:0.17049,Q53275_STRPN/259-278:0.17299):0.00000):0.16848,LYCA_BPCP1/282-301:0.37066):0.18802):0.11750,Q9KGY8_STRPN/113-131:0.28934):0.08125,((((Q97K42_CLOAB/826-844:0.29311,Q97K42_CLOAB/1071-1089:0.14670):0.30091,Q97K42_CLOAB/298-316:0.02052):0.21479,(LYCA_BPCP1/262-280:0.39351,((Q97K42_CLOAB/953-971:0.22964,Q97K42_CLOAB/1807-1825:0.24701):0.08010,Q9KGY8_STRPN/133-151:0.28104):0.00000):0.31390):0.08110,Q8DQ62_STRR6/441-459:0.46808):0.16235):0.07156):0.00000,(((O30874_STRPN/626-644:0.00000,(Q8DP99_STRR6/92-110:0.27504,O34097_STRPN/617-635:0.10036):0.13105):0.10486,Q8KSD4_STRPN/201-219:0.11144):0.30276,(Q8XMW8_CLOPE/98-116:0.28956,((O05166_STRPN/689-707:0.29705,Q8DMZ4_STRR6/412-430:0.20214):0.00000,(O05168_STRPN/257-275:0.12780,Q9KGY8_STRPN/173-191:0.27118):0.14224):0.15081):0.03891):0.21292):0.00000,(((Q45819_CLOAB/552-570:0.11850,(((Q9KGY9_STRPN/157-175:0.70332,Q45820_CLOAB/593-611:0.03799):0.22424,Q8XMW8_CLOPE/78-96:0.25402):0.00000,(Q9KGY8_STRPN/153-171:0.47897,Q45820_CLOAB/613-631:0.10524):0.13899):0.00000):0.06083,(Q45821_CLOAB/504-522:0.26873,Q45821_CLOAB/544-562:0.05580):0.00000):0.17675,(O30874_STRPN/465-483:0.06526,((O34097_STRPN/576-594:0.17408,Q9KK54_STRPN/580-598:0.19899):0.00000,Q8DP99_STRR6/71-89:0.05470):0.11725):0.17843):0.00000):0.17464,(Q97SI4_STRPN/301-319:0.11611,((Q46288_CLOPE/75-93:0.33046,Q9KGY8_STRPN/93-111:0.27324):0.16750,(((O66380_ERYRH/467-485:0.19198,(O66380_ERYRH/487-505:0.00000,O66380_ERYRH/447-465:0.54617):0.14388):0.04363,ALYS_STRPN/239-257:0.28951):0.18018,Q8DR52_STRR6/239-258:0.25059):0.07803):0.07098):0.09747):0.00000,(Q8DR52_STRR6/219-237:0.29861,Q8DR40_STRR6/3-21:0.00000):0.05531):0.06417):0.06477):0.00000,Q46149_CLONO/1891-1909:0.48163):0.00000,Q8XMR2_CLOPE/56-74:0.60315):0.10360,(Q8DMZ4_STRR6/352-370:0.29565,((Q8XMR2_CLOPE/96-114:0.11146,(Q8XMR3_CLOPE/78-96:0.28533,((Q8XMR4_CLOPE/687-705:0.12975,(Q8XMR3_CLOPE/278-296:0.40839,(Q8XMR4_CLOPE/647-665:0.11098,Q8XMR4_CLOPE/767-785:0.16602):0.15384):0.00000):0.15198,Q8XMR2_CLOPE/176-194:0.00000):0.06603):0.12741):0.10835,(O30874_STRPN/445-463:0.41848,(ALYS_BPDP1/218-236:0.24553,Q9AF60_9CAUD/218-236:0.00000):0.13820):0.09947):0.00000):0.00000):0.13280,Q8XMR2_CLOPE/216-234:0.39540):0.12809,((((Q8KZL5_9STRE/1227-1245:0.53611,O68542_STRSL/1365-1383:0.11173):0.12627,(((GTFB_STRMU/1280-1299:0.00000,((Q8KZL5_9STRE/1533-1551:0.20096,(GTF1_STRDO/1573-1591:0.41784,Q9WXJ5_9STRE/1446-1464:0.19665):0.27130):0.14528,GTFC_STRMU/1373-1392:0.16172):0.26934):0.21435,Q55265_STRSL/1324-1344:0.34140):0.14784,(((GTFD_STRMU/1375-1394:0.12309,(GTFD_STRMU/1247-1266:0.22702,((Q8DUW9_STRMU/215-233:0.17511,Q8G9Q2_LEUME/1558-1577:0.39159):0.00000,((Q8DUW9_STRMU/150-169:0.30473,GTFD_STRMU/1311-1330:0.38775):0.00000,(GTF1_STRDO/1217-1236:0.08418,GTF1_STRDO/1282-1301:0.23224):0.12054):0.12958):0.00000):0.20657):0.21402,Q54178_STRGN/1358-1377:0.47063):0.11707,Q55265_STRSL/1512-1531:0.31602):0.00000):0.07588):0.12901,(GTFS_STRDO/1074-1092:0.09103,Q9WXJ4_9STRE/1046-1064:0.11867):0.00000):0.28083,((Q8RJT8_STRPN/218-237:0.09254,(ALYS_STRPN/218-237:0.00000,ALYS_BPDP1/197-216:0.44380):0.16585):0.28212,((GTFS_STRDO/1344-1362:0.27162,Q00600_STRSL/1298-1316:0.29366):0.21929,((LYCA_BPCP1/221-239:0.33372,(ALYS_STRPN/197-215:0.00000,ALYS_BPDP1/174-194:0.51268):0.09331):0.13985,(Q8DP07_STRR6/153-171:0.68731,Q9ZFN0_9FIRM/246-264:0.23770):0.40477):0.14641):0.01307):0.05691):0.00000):0.29640,((Q9ZFN0_9FIRM/267-285:0.00122,Q9ZFN1_9FIRM/289-307:0.22596):0.24390,((((Q9ZFN0_9FIRM/288-306:0.24355,(Q9ZFN0_9FIRM/330-348:0.34811,Q9ZFN2_9FIRM/14-32:0.00000):0.25355):0.33701,Q54447_STRMU/160-178:0.39737):0.09679,Q7UUN6_RHOBA/156-175:0.71931):0.17058,((LYCA_BPCP1/242-260:0.00000,Q8DQ62_STRR6/381-399:0.87499):0.29429,(((LYCA_BPCP1/200-218:1.02922,Y812_ARCFU/125-144:0.20135):0.49532,(LYCA_BPCP1/304-322:0.46896,((Q53275_STRPN/281-299:0.28341,ALYS_STRPN/281-301:0.19995):0.04050,ALYS_BPDP1/260-278:0.39863):0.21695):0.24642):0.12683,(((LYTB_STRPN/251-271:0.12233,((LYTB_STRPN/148-166:0.55418,LYTB_STRPN/66-84:0.39947):0.25606,LYTB_STRPN/209-227:0.00000):0.43070):0.19665,(Q8CZ16_STRR6/132-152:0.04322,Q8DP07_STRR6/130-150:0.29935):0.08982):0.25783,LYTB_STRPN/230-248:0.24787):0.14112):0.07493):0.21296):0.23961):0.26148):0.14023,Q8CZ16_STRR6/94-112:0.33654):0.14528,(((Q48756_LEUME/921-939:0.06425,(O68542_STRSL/1156-1175:0.13256,(GTFD_STRMU/1117-1136:0.11106,((((Q8G9Q2_LEUME/1232-1251:0.66430,Q55265_STRSL/1192-1211:0.10024):0.13207,(GTFB_STRMU/1088-1106:0.09458,GTFC_STRMU/1117-1135:0.13449):0.10532):0.08758,((Q54178_STRGN/1163-1182:0.17009,Q8G9Q2_LEUME/1170-1188:0.12439):0.00000,Q9RE05_LEUME/1327-1346:0.15507):0.09800):0.04716,(O52224_LEUME/1164-1183:0.25550,Q8KZL5_9STRE/1092-1110:0.38717):0.03563):0.06575):0.19803):0.26342):0.00000,Q9RE05_LEUME/1381-1400:0.36214):0.27194,(Q00599_STRSL/1115-1133:0.19496,(Q00599_STRSL/1252-1270:0.34202,Q9WXJ5_9STRE/1248-1266:0.38272):0.39887):0.13192):0.18524):0.13809,Q8XMQ8_CLOPE/43-61:0.86675):0.00000,Q55265_STRSL/1389-1407:0.00000):0.42186,(Q00599_STRSL/1511-1530:0.30702,Q00600_STRSL/1427-1446:0.32512):0.13638):0.22660,Q8KZL5_9STRE/1381-1400:0.11796,Q8KZL5_9STRE/1468-1487:0.06766);