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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01399 phylogeny
for restricted amino acid alignment


 
(((((((((((((IF3A_ARATH/372-510,IF3A_HUMAN/365-495),Q9Z4Q5_APPPP/12-94),Y1654_METJA/96-223),(YIH1_YEAST/258-362,(((((Q9V3V4_DROME/285-389,(O81694_ARATH/280-384,((RPN6_YEAST/297-401,RPN6_SCHPO/283-387),PSD11_HUMAN/284-388))),Q20938_CAEEL/301-405),YMJ5_CAEEL/331-435),(((CSN2_ARATH/305-409,(CSN2_HUMAN/309-413,CSN2_DROME/310-414)),CSN2_SCHPO/311-415),CSN2_CAEEL/309-413)),((((CSN1_SCHPO/262-366,((CSN1_ARATH/293-397,Q9FVN4_ORYSA/292-396),(CSN1_HUMAN/304-408,CSN1_DROME/353-457))),((O65072_PICMA/97-201,((PSD6_DROME/254-358,PSD6_MOUSE/254-358),(RPN7_SCHPO/268-373,RPN7_YEAST/287-392))),PSD6_CAEEL/274-379)),CSN1_CAEEL/393-497),((Q9C5Z3_ARATH/288-404,(IF36_CAEEL/288-394,IF36_DROME/284-389)),Q9NEE7_LEIMA/282-387))))),(((((Q9V6X8_DROME/236-337,O60735_HUMAN/235-336),Q9LF21_ARATH/257-359),CSN7B_SCHPO/241-344),(((CSN7_ARATH/60-156,(CSN7_DROME/69-164,(CSN7B_MOUSE/61-156,CSN7A_MOUSE/61-156))),Q00648_EMENI/68-162),CSN7A_SCHPO/35-132)),((((Q9V469_DROME/236-340,PSD13_HUMAN/231-335),Q22253_CAEEL/240-344),(RPN9_YEAST/249-352,RPN9_SCHPO/236-340)),Q9U1C9_LEIMA/266-371))),CSN4_SCHPO/172-353),(((CSN3_HUMAN/258-362,CSN3_DROME/274-378),Q40112_LYCCI/70-174),(((YJ54_YEAST/298-415,(O96149_PLAF7/320-443,Q08231_YEAST/297-428)),(Q9Y820_SCHPO/292-412,(YE18_SCHPO/302-413,(Q9VTL1_DROME/275-386,(Q9NUK6_HUMAN/331-442,YPIA_CAEEL/289-400))))),(((PSD31_ARATH/311-418,PSD3_CAEEL/326-434),RPN3_YEAST/343-447),(PSD3_HUMAN/358-462,PSD3_ANOGA/321-425))))),CSN3_CAEEL/338-440),(CSN4_CAEEL/277-375,((CSN4_ARATH/263-362,Q9C467_EMENI/265-371),(CSN4_MOUSE/264-363,P91586_CIOIN/265-364)))),((Q9FGF7_ARATH/377-487,(PSD12_HUMAN/300-417,(Q9V3Z4_DROME/347-458,(RPN5_YEAST/294-404,RPN5_SCHPO/288-399)))),Q9N9T8_LEIMA/324-430)),((Q9V859_DROME/678-812,IF38_HUMAN/712-846),IF38_CAEEL/669-803)),IF38_MEDTR/663-793),IF38_ARATH/643-773,Q9LIL2_ARATH/596-727);
(((((((((((((IF3A_ARATH/372-510:0.64783,IF3A_HUMAN/365-495:0.54224):0.84691,Q9Z4Q5_APPPP/12-94:1.18820):0.40291,Y1654_METJA/96-223:2.05514):0.12469,(YIH1_YEAST/258-362:1.78524,(((((Q9V3V4_DROME/285-389:0.12308,(O81694_ARATH/280-384:0.19653,((RPN6_YEAST/297-401:0.40260,RPN6_SCHPO/283-387:0.10765):0.08555,PSD11_HUMAN/284-388:0.27379):0.10332):0.13250):0.11810,Q20938_CAEEL/301-405:0.33684):0.30561,YMJ5_CAEEL/331-435:0.50437):0.81689,(((CSN2_ARATH/305-409:0.41624,(CSN2_HUMAN/309-413:0.08509,CSN2_DROME/310-414:0.21393):0.07098):0.18682,CSN2_SCHPO/311-415:0.54726):0.07617,CSN2_CAEEL/309-413:0.49117):0.16118):0.27226,((((CSN1_SCHPO/262-366:1.17791,((CSN1_ARATH/293-397:0.08445,Q9FVN4_ORYSA/292-396:0.16972):0.27601,(CSN1_HUMAN/304-408:0.09087,CSN1_DROME/353-457:0.20678):0.20236):0.30467):0.19869,((O65072_PICMA/97-201:0.22963,((PSD6_DROME/254-358:0.23325,PSD6_MOUSE/254-358:0.21772):0.15557,(RPN7_SCHPO/268-373:0.22987,RPN7_YEAST/287-392:0.56011):0.32990):0.10281):0.26761,PSD6_CAEEL/274-379:0.36740):0.64533):0.29163,CSN1_CAEEL/393-497:0.71848):0.40093,((Q9C5Z3_ARATH/288-404:0.25596,(IF36_CAEEL/288-394:0.31087,IF36_DROME/284-389:0.24325):0.17001):0.60092,Q9NEE7_LEIMA/282-387:0.50804):0.60960):0.10826):0.16502):0.08418):0.22927,(((((Q9V6X8_DROME/236-337:0.20321,O60735_HUMAN/235-336:0.40682):0.36134,Q9LF21_ARATH/257-359:0.65498):0.33581,CSN7B_SCHPO/241-344:0.78083):0.06744,(((CSN7_ARATH/60-156:0.61985,(CSN7_DROME/69-164:0.39459,(CSN7B_MOUSE/61-156:0.17662,CSN7A_MOUSE/61-156:0.36306):0.11450):0.28380):0.36652,Q00648_EMENI/68-162:0.50974):0.25622,CSN7A_SCHPO/35-132:1.04835):0.25908):0.27545,((((Q9V469_DROME/236-340:0.42700,PSD13_HUMAN/231-335:0.34916):0.08552,Q22253_CAEEL/240-344:0.70480):0.08935,(RPN9_YEAST/249-352:0.44959,RPN9_SCHPO/236-340:0.41259):0.17125):0.23874,Q9U1C9_LEIMA/266-371:0.81340):0.29176):0.49470):0.04309,CSN4_SCHPO/172-353:1.65666):0.18451,(((CSN3_HUMAN/258-362:0.08860,CSN3_DROME/274-378:0.33297):0.22663,Q40112_LYCCI/70-174:0.22841):0.50717,(((YJ54_YEAST/298-415:1.14802,(O96149_PLAF7/320-443:0.98385,Q08231_YEAST/297-428:1.57004):0.04335):0.09339,(Q9Y820_SCHPO/292-412:0.71232,(YE18_SCHPO/302-413:0.68375,(Q9VTL1_DROME/275-386:0.44288,(Q9NUK6_HUMAN/331-442:0.24393,YPIA_CAEEL/289-400:0.33292):0.18907):0.36039):0.10317):0.23463):0.94345,(((PSD31_ARATH/311-418:0.36007,PSD3_CAEEL/326-434:0.53096):0.00441,RPN3_YEAST/343-447:0.58239):0.03598,(PSD3_HUMAN/358-462:0.12342,PSD3_ANOGA/321-425:0.25526):0.07210):0.36161):0.33041):0.32469):0.11170,CSN3_CAEEL/338-440:1.43489):0.18428,(CSN4_CAEEL/277-375:0.40275,((CSN4_ARATH/263-362:0.37622,Q9C467_EMENI/265-371:0.43125):0.11013,(CSN4_MOUSE/264-363:0.11037,P91586_CIOIN/265-364:0.20251):0.06605):0.39936):0.56386):0.25749,((Q9FGF7_ARATH/377-487:0.48295,(PSD12_HUMAN/300-417:0.24015,(Q9V3Z4_DROME/347-458:0.66906,(RPN5_YEAST/294-404:0.49814,RPN5_SCHPO/288-399:0.43696):0.18010):0.15414):0.21200):0.15649,Q9N9T8_LEIMA/324-430:0.84578):0.52186):1.12560,((Q9V859_DROME/678-812:0.27004,IF38_HUMAN/712-846:0.14111):0.11827,IF38_CAEEL/669-803:0.28276):0.23906):0.25353,IF38_MEDTR/663-793:0.17236):0.13526,IF38_ARATH/643-773:0.01299,Q9LIL2_ARATH/596-727:0.22798);