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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01399 phylogeny
for amino acid alignment


 
((((((((((Y1654_METJA/96-223,Q9Z4Q5_APPPP/12-94),(YIH1_YEAST/258-362,(((((Q9V3V4_DROME/285-389,(O81694_ARATH/280-384,((RPN6_YEAST/297-401,RPN6_SCHPO/283-387),PSD11_HUMAN/284-388))),Q20938_CAEEL/301-405),YMJ5_CAEEL/331-435),((((Q9SDJ1_ORYSA/299-463,CSN2_ARATH/305-409),(CSN2_HUMAN/309-413,CSN2_DROME/310-414)),CSN2_SCHPO/311-415),CSN2_CAEEL/309-413)),((((CSN1_SCHPO/262-366,((CSN1_ARATH/293-397,Q9FVN4_ORYSA/292-396),(CSN1_HUMAN/304-408,CSN1_DROME/353-457))),((O65072_PICMA/97-201,((PSD6_DROME/254-358,PSD6_MOUSE/254-358),(RPN7_SCHPO/268-373,RPN7_YEAST/287-392))),PSD6_CAEEL/274-379)),CSN1_CAEEL/393-497),((Q9C5Z3_ARATH/288-404,(IF36_CAEEL/288-394,IF36_DROME/284-389)),Q9NEE7_LEIMA/282-387))))),((((CSN7B_SCHPO/241-344,(((Q9V6X8_DROME/236-337,O60735_HUMAN/235-336),Q9LF21_ARATH/257-359),CSN7_CAEEL/245-348)),(((CSN7_ARATH/60-156,(CSN7_DROME/69-164,(CSN7B_MOUSE/61-156,CSN7A_MOUSE/61-156))),Q00648_EMENI/68-162),CSN7A_SCHPO/35-132)),((((Q9V469_DROME/236-340,PSD13_HUMAN/231-335),Q22253_CAEEL/240-344),(RPN9_YEAST/249-352,RPN9_SCHPO/236-340)),Q9U1C9_LEIMA/266-371)),(CSN4_SCHPO/172-353,((CSN3_CAEEL/338-440,((CSN3_HUMAN/258-362,CSN3_DROME/274-378),Q40112_LYCCI/70-174)),((((Q9Y820_SCHPO/292-412,(YE18_SCHPO/302-413,(Q9VTL1_DROME/275-386,(Q9NUK6_HUMAN/331-442,YPIA_CAEEL/289-400)))),(O96149_PLAF7/320-443,Q08231_YEAST/297-428)),YJ54_YEAST/298-415),((PSD31_ARATH/311-418,((RPN3_SCHPO/321-425,RPN3_YEAST/343-447),(PSD3_HUMAN/358-462,PSD3_ANOGA/321-425))),PSD3_CAEEL/326-434)))))),(IF3A_ARATH/372-510,IF3A_HUMAN/365-495)),(CSN4_CAEEL/277-375,((CSN4_ARATH/263-362,Q9C467_EMENI/265-371),(CSN4_MOUSE/264-363,P91586_CIOIN/265-364)))),((((Q9FGF7_ARATH/377-487,Q19324_CAEEL/325-444),(Q9V3Z4_DROME/347-458,(RPN5_YEAST/294-404,RPN5_SCHPO/288-399))),PSD12_HUMAN/300-417),Q9N9T8_LEIMA/324-430)),(IF38_YEAST/650-780,IF38_SCHPO/723-853)),((Q9V859_DROME/678-812,IF38_HUMAN/712-846),IF38_CAEEL/669-803)),IF38_MEDTR/663-793),IF38_ARATH/643-773,Q9LIL2_ARATH/596-727);
((((((((((Y1654_METJA/96-223:1.57656,Q9Z4Q5_APPPP/12-94:1.25278):0.57304,(YIH1_YEAST/258-362:1.78424,(((((Q9V3V4_DROME/285-389:0.12081,(O81694_ARATH/280-384:0.19662,((RPN6_YEAST/297-401:0.40254,RPN6_SCHPO/283-387:0.10729):0.08558,PSD11_HUMAN/284-388:0.27363):0.10344):0.13433):0.11516,Q20938_CAEEL/301-405:0.33896):0.29952,YMJ5_CAEEL/331-435:0.51029):0.76642,((((Q9SDJ1_ORYSA/299-463:0.01498,CSN2_ARATH/305-409:0.21331):0.20468,(CSN2_HUMAN/309-413:0.03284,CSN2_DROME/310-414:0.26431):0.09277):0.21356,CSN2_SCHPO/311-415:0.55728):0.06095,CSN2_CAEEL/309-413:0.48181):0.22030):0.22223,((((CSN1_SCHPO/262-366:1.17708,((CSN1_ARATH/293-397:0.08468,Q9FVN4_ORYSA/292-396:0.16935):0.27427,(CSN1_HUMAN/304-408:0.09049,CSN1_DROME/353-457:0.20708):0.20300):0.30013):0.19669,((O65072_PICMA/97-201:0.23141,((PSD6_DROME/254-358:0.23291,PSD6_MOUSE/254-358:0.21768):0.15491,(RPN7_SCHPO/268-373:0.22949,RPN7_YEAST/287-392:0.55975):0.33002):0.10180):0.25511,PSD6_CAEEL/274-379:0.37997):0.64211):0.27762,CSN1_CAEEL/393-497:0.73906):0.38965,((Q9C5Z3_ARATH/288-404:0.26100,(IF36_CAEEL/288-394:0.31261,IF36_DROME/284-389:0.24212):0.16585):0.62617,Q9NEE7_LEIMA/282-387:0.48144):0.62486):0.13746):0.18866):0.12955):0.08804,((((CSN7B_SCHPO/241-344:0.71407,(((Q9V6X8_DROME/236-337:0.35225,O60735_HUMAN/235-336:0.25666):0.25110,Q9LF21_ARATH/257-359:0.74696):0.33708,CSN7_CAEEL/245-348:0.61819):0.19957):0.06435,(((CSN7_ARATH/60-156:0.61156,(CSN7_DROME/69-164:0.36536,(CSN7B_MOUSE/61-156:0.17638,CSN7A_MOUSE/61-156:0.36277):0.14043):0.27763):0.35967,Q00648_EMENI/68-162:0.53609):0.20682,CSN7A_SCHPO/35-132:1.06075):0.27371):0.41541,((((Q9V469_DROME/236-340:0.41703,PSD13_HUMAN/231-335:0.35926):0.08088,Q22253_CAEEL/240-344:0.70718):0.09541,(RPN9_YEAST/249-352:0.45105,RPN9_SCHPO/236-340:0.41466):0.16712):0.23457,Q9U1C9_LEIMA/266-371:0.83244):0.26333):0.45161,(CSN4_SCHPO/172-353:1.66603,((CSN3_CAEEL/338-440:1.33860,((CSN3_HUMAN/258-362:0.08338,CSN3_DROME/274-378:0.33721):0.23411,Q40112_LYCCI/70-174:0.21823):0.34215):0.32117,((((Q9Y820_SCHPO/292-412:0.72035,(YE18_SCHPO/302-413:0.68361,(Q9VTL1_DROME/275-386:0.44510,(Q9NUK6_HUMAN/331-442:0.24603,YPIA_CAEEL/289-400:0.32964):0.18633):0.35730):0.09572):0.28648,(O96149_PLAF7/320-443:0.98246,Q08231_YEAST/297-428:1.58063):0.06989):0.04236,YJ54_YEAST/298-415:1.12590):0.81133,((PSD31_ARATH/311-418:0.32667,((RPN3_SCHPO/321-425:0.30150,RPN3_YEAST/343-447:0.48525):0.12356,(PSD3_HUMAN/358-462:0.12341,PSD3_ANOGA/321-425:0.24574):0.08964):0.05316):0.04218,PSD3_CAEEL/326-434:0.48938):0.43045):0.29772):0.36520):0.04406):0.12646):0.12609,(IF3A_ARATH/372-510:0.63004,IF3A_HUMAN/365-495:0.56108):1.29213):0.18365,(CSN4_CAEEL/277-375:0.46456,((CSN4_ARATH/263-362:0.38267,Q9C467_EMENI/265-371:0.42340):0.10001,(CSN4_MOUSE/264-363:0.11131,P91586_CIOIN/265-364:0.20219):0.07596):0.33178):0.56880):0.37275,((((Q9FGF7_ARATH/377-487:0.59642,Q19324_CAEEL/325-444:0.60544):0.13252,(Q9V3Z4_DROME/347-458:0.67209,(RPN5_YEAST/294-404:0.51621,RPN5_SCHPO/288-399:0.41509):0.18290):0.21970):0.06029,PSD12_HUMAN/300-417:0.11129):0.53681,Q9N9T8_LEIMA/324-430:0.63737):0.56408):0.92812,(IF38_YEAST/650-780:0.91831,IF38_SCHPO/723-853:0.38164):0.02892):0.23269,((Q9V859_DROME/678-812:0.26246,IF38_HUMAN/712-846:0.13873):0.09308,IF38_CAEEL/669-803:0.32027):0.23913):0.26924,IF38_MEDTR/663-793:0.17777):0.14512,IF38_ARATH/643-773:0.00000,Q9LIL2_ARATH/596-727:0.23938);