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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01391 - Collagen)
Collagen triple helix repeat (20 copies)
(Pfam reference: accession no. PF01391)
(Interpro reference: accession no. IPR008160)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
41 sequences @ 60 aa
(ave. pairwise identity: 0.47)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 20.69)
nucleotides
(available for above)
40 sequences @ 180 bp
(ave. pairwise identity: 0.50)
New Hampshire format
(total tree length: 14.47)
amino acids, restricted set
(corresp. to available nt seqs)
40 sequences @ 60 aa
(ave. pairwise identity: 0.47)
New Hampshire format
(total tree length: 20.12)