EMBL-EBI > Goldman Group

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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01288 alignment
(17 sequences with 450 bp)


FOLKP_CHLPN/8-141 TGCTTAAGTTTAGGATCAAATTTAGGAAATCGTTTTAAAAATCTACAGATTGCTCGTACTTTATTAGGC---GAACAAGCTGTTTTAGGTCTACGTAGTTCGGTAATTCTAGAAACAGAAGCCTTGTTATTACCGGGATCTCCTccaGAGTGGGACCTTCCTTATTTTAATTCGGTACTTGTAGGGGAA...ACCACCCTATCTTTGCGAGAACTACTGGTTACTATCAAACAGATAGAGAAGGTGGTAGGTAGAGCAGAGGAGTCGCCC------CCATGGTCTCCT------...CGAACCATAGATGTAGATATTTTGCTTTATGGTGAC------..................GAGTCTTTTTGTTGTGATCACACCGAGATAACGATTCCTTTGTCCAATTTGTTATCACGTCCTTTTTTGATTGCTTTAATAGCATCT---CTT
FOLKP_CHLTR/8-140 TGTTTAAGTTTGGGTTCCAATTTAGGTAACCGGCATGAGCATATAAGACGCGCTTATGCAAGTTTAAAG---AAGGCTGGGATCCGAAATTTAAAAAGTTCTGTGATTTTAGAGACGAAGGCTTTGTTGTTAGAAGGGGCTCCGaaaGAATGGGATCTTCCTTATTTTAACTCTGTGGTTATTGGGGAA...ACGCAGCTATCTCCAGACGAGTTGATTGAAGAAATCAAGATGATAGAAAGTCGTTTTGGA---CAAGATGCTTCTTTG------AAATGGGGGCCT------...CGACCGATTGATATTGATGTGCTTTTCTATGGAGAC------..................GAAGCTTTTTCTTATCATAGTGACAAATGTACAATCCCACATCCTAAGGTATTAGAAAGACCTTTTCTTCTTTCTATGATAGCTTCT---TTA
HPPK_HELPY/26-154 GTTTTAGGGTTGGGATCTAATCTTAAAAATCCTTTAAAAATATTAAAAAATTGTTTTTTGTATTTTAAAAATCATAGTAAAATCGGGAAAATTTTTTCTTCGCCCATTTATATCAATCCGCCTTTTGGTTACACTAAGCAACCT...------------AACTTTTATAACGCTACGATCATCCTTAAA...ACATCTTTAAGTTTGCGCCATTTTTTTGCTCTGGTTTTTTATATAGAA---AGGCGTTTTGGCCGCCAAAGGAAGCGCGATTTTAAAGACGCTCCA------...AGAACTTTAGACATTGATATTATCGCTTTCAACCAA------..................------GTCATTTTAAGACAGAATGATTTGGCTTTACCTCACCCTAAATGGAGTGAAAGGGATTCGGTGTTAGTGCCG---TTGGCTTTGCAA
HPPK_MYCLE/5-139 GTACTGTCTATAGGATCCAATCTGGGTGACCGGCTGGCGTGGCTGCAGTCAGCCGTCGATGGGCTGGGTGAT------------GCGGTTGTCGCGGTCTCTCCGGTGTATGACACCGTCCCGTGGGGAGCCGTGGAGCAGAGA...------------TCGTTCCTCAACGCGGTAGTGATCGCCGACggcCCGGCGTATGACACGAAGGCCTGGCTGTGTCGGGCTCAGGAGCTCGAG---CGGAACGCGGGTCGGGTGCGGGGACAG------CGCTGGGGCGCA------...CGCACACTCGACGTCGATCTGATCTCCTGCTATCAGACTTCGggtgctacgaccggtgcgGTCGAGGTGATTACGTGCGAAAGCAACTTGACGTTGCCGCATCCGCGGGCTCATCTGCGGGCTTTCGTGCTGGTTCCGTGGTTGGCTGTCGAC
HPPK_MYCTU/5-138 GTGCTCTCGGTTGGCTCCAACCTGGGTGACCGCCTGGCACGATTGCGGTCGGTCGCCGACGGTCTCGGCGAT------------GCGTTGATTGCGGCTTCCCCGATATATGAGGCCGACCCCTGGGGTGGGGTGGAGCAGGGG...------------CAGTTCCTCAATGCGGTGCTGATCGCCGACgatCCTACCTGCGAACCGCGGGAGTGGCTGCGGCGGGCGCAGGAGTTCGAG---CGCGCTGCGGGCAGGGTGCGTGGCCAG------CGCTGGGGTCCA------...CGAAATCTCGACGTCGACCTGATCGCCTGCTACCAGACCTCG...gccaccgaggctctgGTCGAAGTGACCGCGCGGGAGAACCACCTCACGCTGCCGCACCCACTGGCGCATCTGCGGGCCTTTGTGTTGATCCCGTGGATTGCCGTCGAC
O04862_PEA/47-173 GTGATTGCTTTGGGAAGTAATGTAGGTGATAGACTACATAACTTCAAGGAAGCCTTGAAATTGATGAGGAAG---TCAGGCATACACATCACAAGACATGCAAGTCTGTATGAGACAGCACCAGCGTATGTTACTGACCAACCT...------------CGCTTCCTCAACTCTGCAGTAAGAGCGGAT...ACGAAACTCGGGCCACATGAATTATTGGCTGCACTCAAACGAATCGAG---AAGGATATGGGCCGTACTGATGGT------ATAAGGTATGGTCCA------...AGGCCAATTGACTTAGACATTTTGTTCTATGGTAAA------..................------TTTAAAGTCAGATCTGATATTCTCACAGTACCTCACGAAAGAATTTGGGAACGACCGTTTGTCATGGCCCCTTTGATGGATTTGCTG
FAS_PNECA/297-422 TATATATCACTTGGTAGTAATCTTGGGAATAGAATTAAATTTATATTGGATGCCATAGAAAAAATGTCT---ATAAAAGGAATAAAGGTTTTGAAAACATCTATGTTGTATGAATCAAAGCCTATGTATTTTAAAGATCAGCCT...------------GCATTTTATAATGCAGTATGTAAGGTTCAA...ACTTCTCTACATCCTGAGCAACTTTTGTTTGAATTGCAATTAATTGAA---AAAGAGCTTGGGCGTGTTAAAGTTATT------GATAAGGGCCCA------...CGGTGTATTGATTTAGATATTGTTTTTTAT------------..................GGTAGAAAAATAATTAATTCTGAATCATTAATTATTCCTCATCCCCGAGTACTTGAACGTTCTTTTGTTTTAAAACCTCTTCTTGAT---ATA
O75013_SCHPO/252-378 TATTTGTCTTTTGGTTCAAATATTGGTGACAAATTTGAGCAAATCCAAACAGCATTATCTATGTTGCATAAAATAGAGGGTATTCGTGTGTTGGATGTTTCCCCTTTGTACGAAACAGAGCCGATGTATTATAAAGACCAACCT...------------TCTTTTTTGAACGGTGTTTGCAAAATTGAA...ACCAGAATGTCGCCTATCAATCTTTTAAGAGCTTGTCAATCCATTGAA---CAAGAAATGGGTCGAATCAAAACAATT------TTAAAAGGACCA------...AGGTGTATAGATCTCGATATTGTCTTGTAC------------..................GAAGATTGTGTTTATGAATCAGAAGTTTTGACTATTCCCCATTTAGGGCTGCAAGAACGTGAGTTTGTTTTACGTCCATTGCTGGCC---TTG
FAS_YEAST/341-474 TTTTTAGCGTTTGGTTCAAACATTGGGGACCGTTTCAAACACATTCAAATGGCGTTGCAATTATTATCAAGGGAAAAAACGGTTAAATTACGGAATATTTCGTCTATTTTTGAAAGTGAACCAATGTATTTCAAAGATCAAACC...------------CCTTTCATGAATGGGTGTGTTGAGGTGGAG...ACATTACTGACCCCAAGCGAATTATTAAAATTGTGTAAAAAAATTGAATATGAAGAGTTGCAAAGAGTCAAGCATTTT------GATAATGGTCCG------...AGAACAATAGATCTGGATATTGTTATGTTTTTGAATAGCGCC...............ggaGAAGATATTATAGTAAATGAACCGGATTTGAATATACCGCATCCTAGAATGCTGGAGAGGACTTTCGTTCTTGAGCCGTTATGTGAATTAATA
HPPK_BACSU/6-133 TATATTGCACTTGGATCTAATATTGGAGATAGAGAAACGTATTTAAGGCAAGCAGTGGCTTTACTGCATCAGCATGCTGCGGTGACAGTCACTAAAGTGTCGTCTATTTACGAAACTGACCCGGTCGGATACGAAGATCAAGCT...------------CAATTTTTGAATATGGCTGTTGAAATCAAG...ACATCATTGAACCCTTTTGAACTCCTTGAACTGACGCAGCAGATAGAA---AATGAATTAGGCAGAACAAGGGAA------GTAAGATGGGGGCCG------...CGGACGGCAGACCTTGACATTTTGTTATTTAATCGT------..................------GAAAATATTGAAACAGAGCAACTAATTGTTCCGCATCCGAGAATGTATGAGCGTTTGTTTGTCCTTGCGCCGCTTGCGGAAATTTGC
HPPK_METEX/5-132 TATCTCGGGCTCGGCAGCAATATCGGCGACAAGGCCGCGATGCTGGCCGGGGCCGTCGAGCACCTTGCCGCAACGCCCGGCATCCGGGTCGTGGCGCGCTCCGCCGATTACCGCACGCCGCCCTGGGGCGACACCGATCAGGAC...------------TGGTTCCTCAACGCAGCGGTCGCCATCGAT...ACCGAGCTGACACCGCACGGGTTGCTGGAGGTCTGCCTGTCGATCGAG---GCGGCGCTCGGGCGCGTCCGCGAGCCC------CGCTGGGGGCCG------...CGCGTCATCGACATCGACGTGCTGGCCTATGAGGGG------..................------GCGCAGGTTTCCGACGAACGCCTCGTGCTGCCGCACCGCTTCGTGCGCGAGCGCGCCTTCGTGCTGGTGCCGCTGGCCGAGATCGCC
SULD_STRPN/123-249 TTTATCGCCCTAGGAAGCAATATGGGAGATAAGCAAGCAAACTTGAAGCAAGCCATTGACAAACTGCGAGCTCGT---GGCATCCATATTCTCAAAGAGTCCAGTGTCTTAGCGACGGAGCCTTGGGGTGGAGTGGAGCAGGAT...------------AGCTTTGCCAATCAAGTGGTTGAGGTGGAA...ACCTGGCTACCAGCACAAGACTTGTTAGAAACCTTGTTAGCCATTGAG---TCAGAGCTGGGACGGGTGAGAGAA------GTGCATTGGGGACCT------...CGTTTGATTGATTTGGACTTGCTCTTTGTGGAGGAC------..................------CAGATCCTTTATACAGACGACCTCATATTGCCTCATCCTTACATAGCGGAACGCCTTTTTGTCCTTGAGTCCTTACAGGAAATTGCG
HPPK_HAEIN/5-132 TATATTGCTCTAGGTAGCAATTTAAACACACCAGTAGAACAATTACATGCTGCGCTTAAAGCGATAAGTCAGTTATCAAACACTCATTTGGTAACAACGAGCTCTTTTTATAAAAGCAAACCGCTCGGCCCACAAGATCAACCC...------------GATTATGTGAATGCCGTTGCAAAAATTGAA...ACCGAACTTAGTCCGCTCAAGCTATTAGATGAATTACAGCGTATTGAA---AACGAGCAAGGTCGAGTGCGT------TTACGTCGCTGGGGCGAA------...CGCACGTTAGATTTAGATATTTTGCTCTACGGCAAT------..................------GAAATTATTCAAAACGAACGCTTAACAATTCCCCATTATGATATGCATAACCGTGAGTTTGTCATTGTGCCGTTGTTTGAAATCGCA
HPPK_ECOLI/4-132 TATATTGCCATAGGCAGCAATCTGGCCTCTCCGCTGGAGCAGGTCAATGCTGCCCTGAAAGCATTAGGCGATATCCCTGAAAGCCACATTCTTACCGTTTCTTCGTTTTACCGCACCCCACCGCTGGGCCCGCAAGATCAACCC...------------GATTACTTAAACGCAGCCGTGGCGCTGGAA...ACCTCTCTTGCACCTGAAGAGCTACTCAATCACACACAGCGTATTGAA---TTGCAGCAAGGTCGCGTCCGCAAA---GCTGAACGCTGGGGACCA------...CGCACGCTGGATCTCGACATCATGCTGTTTGGTAAT------..................------GAAGTGATAAATACTGAACGCCTGACCGTTCCGCACTACGATATGAAGAATCGTGGATTTATGCTGTGGCCGCTGTTTGAAATCGCG
HPPK_SYNY3/17-143 GTGGTAGGCTTGGGGGGCAATATTGGCCCAGTGCTGGACAATCTCCAAGGGGCGATCGCCGAGTTGGCCTTGGTAGCGGGCATTGAAGTGGAGCGCTGTTCTAGTTGGTACCGTAGCCGAGCTTTTGGGCCG---CCGCAGCCC...------------GACTATATCAATGGCTGTGTGACGTTACGG...GTCAGTTTATCCCCCCCAGAGTTGTTGCAAACTTTACTGGCGATCGAG---CAAAAATTTGGCCGCATTCGTTTG------GAAAAATGGGGACCC------...CGCACCTTAGATCTGGATTTAATTTTCTACGGCGAT------..................------CGCCAATTGGAACAGGCTAGACTGACCATTCCCCACCCGCAAATGCAATACAGACCATTTGTGCTAGTTCCCCTGGCGGAAATTGCC
HPPK_PORGI/5-135 TATCTTTCTTTGGGCAGCAACTTAGGCGATCGACATAGTTTGTTGTCTGCAGCATTGGAGATGCTACAAACGAGG---GTGGGCAGACTGCTCACCCTTTCTCGGTTCTACGAAACCGAGCCGTGGGGATTCGAATCGCCCCAT...------------CCTTTCCTCAATGCGGTGGTGGCTTTGCGA...TCGGAACTCAAACCACAGGACATTCTGCACATCACACAAGCCATCGAA---AGGGAATTGGGTCGTACACAAAAAAGC------AATGGAGGGGTCTATCATgatCGTCCGATCGATATAGACATTCTATTGCATTCCGTATAC---..................------CCGAAAGTACAGTCACCTGAGCTGGAACTGCCCCACCCACAAATGTGGCAACGGGATTTTGTGCGTATGCCGCTATCGGACGTAGCT
HPPK_AQUAE/5-130 TATTTAGGACTCGGGAGCAACGTAGGAGATAGGATATCTTACATACTTAAAGCGATAGAAAAACTTGAGGAATTT------TTGGAAATAGAAAAAATATCCACAGTCTACGAAAGCAAAGCCTGGGGTTTTGAAAACCAAGGA...------------AACTTTCTAAATTTCGTTTTAAAGGCAAAG...ACTTCTCTTCTCCCGCAGGAACTTCTTTTGAAGATAAAAAAAGTGGAA---AAGGAAGTTGGACGAAAGGAAAGG------TTTAAGTGGGGCCCG------...AGGGAAATAGACATAGATATACTCCTGTACAAAGAT------..................------GAAGTCATCAGGACCAAACTCCTGAAAGTCCCCCATCCCTTTCTGGAAAAAAGGGATTTTTTCGTCTATCCACTACTTGAAATAGAA