EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01273 - LBP_BPI_CETP)
LBP / BPI / CETP family, N-terminal domain
(Pfam reference: accession no. PF01273)
(Interpro reference: accession no. IPR001124)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
40 sequences @ 238 aa
(ave. pairwise identity: 0.20)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 33.10)
nucleotides
(available for above)
39 sequences @ 714 bp
(ave. pairwise identity: 0.38)
New Hampshire format
(total tree length: 18.56)
amino acids, restricted set
(corresp. to available nt seqs)
39 sequences @ 238 aa
(ave. pairwise identity: 0.20)
New Hampshire format
(total tree length: 31.75)