EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01225 - Mur_ligase)
Mur ligase family, catalytic domain
(Pfam reference: accession no. PF01225)
(Interpro reference: accession no. IPR000713)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
211 sequences @ 130 aa
(ave. pairwise identity: 0.25)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 100.50)
nucleotides
(available for above)
201 sequences @ 390 bp
(ave. pairwise identity: 0.38)
New Hampshire format
(total tree length: 77.21)
amino acids, restricted set
(corresp. to available nt seqs)
201 sequences @ 130 aa
(ave. pairwise identity: 0.25)
New Hampshire format
(total tree length: 98.46)