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 pan•dit |
PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
| (View raw data for PF01191 - RNA_pol_Rpb5_C) |
| RNA polymerase Rpb5, C-terminal domain |
| (Pfam reference: accession no. PF01191) |
| (Interpro reference: accession no. IPR000783) |
| sequences | alignment | phylogeny |
| amino acids (Pfam-A seed alignment) |
9 sequences @ 79 aa (ave. pairwise identity: 0.46) (view Jalview alignment from Pfam) |
New Hampshire format (total tree length: 4.29) |
| nucleotides (available for above) |
8 sequences @ 237 bp (ave. pairwise identity: 0.50) |
New Hampshire format (total tree length: 3.29) |
|
amino acids, restricted set (corresp. to available nt seqs) |
8 sequences @ 79 aa (ave. pairwise identity: 0.46) |
New Hampshire format (total tree length: 3.80) |