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PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
PF01131 alignment |
| Q07711_STAAU/156-551 | PKEKTYGFYKEGRARELSDWLVGINLSRHFTKISRELG...................NDGVIHIGRVSSPTLNMVYNRENNIKGFKGKKFYKVSATINK-......----------.-DEQEVKTELKNKFDSE--.....-DELHEFLFENDITDLTQKGLVTD-..------IEKEIGYTMPpKFYDLSALQEDMNDKYKISAKRTLEIAQTLYEK---.-----KLITYPRTDSRYITED---.EKEMLLENIDYLKE...........ITKINLN---NELTNNSLINPSKIEDHYAILIT----GNDFNKV-DLKE....EEINVYKSILQNVAMNFMDKEQYETTTI.EIAVKK....LMFEVKGK-...IIQDNGFKALLNK----------QKTSEETIPNFEKNEEVDI-ELDLLEKETTPPKRYTEKTLLKAMAN--PIE-TLEDEGLKSTL-..KEVK-..--GLGTPATRADIIENLKKNKYIQVQ.KNKIYITKN.GILACLLLEGH |
| P96583_BACSU/149-554 | SGKEYENLYHSAVARAEADWIVGINATRALTTKFNAQ-...................----LSCGRVQTPTLAMIAKREADIQAFTPVPYYGIRAAVDG-......----------.-----MTLTWQDKKS----.....--KQ-TRTFNQDVTSRLLKNLQGKQ..AVVAELKKTAKKSFAP.ALYDLTELQRDAHKRFGFSAKETLSVLQKLYEQ---.-HK---LVTYPRTDSRFLSSDIVP.TLKDRLEGMEVKPY...........AQYVSQIKKRGIKSHKGYVNDAKVSDHHAIIPT----EEPLVLSS-LSD....KERKLYDLIAKRFLAVLMPAFEYEETKV.IAEIGG....ETFTAKGKT...-VQSQGWKAVYDMAEEDDE---QEDDRDQTLPALQKGDTLAVRTLTETSGQTKPPARFNEGTLLSAMENPSAFMQGEEKGLVKTLG-..ETGG-..--LG-TVATRADIIEKLFNSFLIEKK.GQDIFITSK.GKQLLQLVPED |
| TOP3_HAEIN/151-573 | PNRNFIPLATSALARARADWLYGINMTRAYTIRGRQTG...................YDGVLSVGRVQTPVLGLIVRRDLEIEHFQPKDFFEVQAWVNP-......ESKEEKTPEK.-STALFSALWQPSKACEDY.....-QDDDGRVLSKGLAEKVVKRITNQP..AEVTEYKDVREKETAP.LPYSLSALQIDAAKRFGMSAQAVLDTCQRLYET---.-HR---LITYPRSDCRYLPEEHFA.ERHNVLNAISTHCE...........AYQVLPN-VILTEQRNRCWNDKKVEAHHAIIPT----AKNRPVN--LTQ....EERNIYSLIARQYLMQFCPDAEYRKSKI.TLNIAG....GTFIAQARN...-LQTAGWKELLG-KEDDT-----ENQEPLL-PIVKKGQILHCERGEVMSKKTQPPKPFTDATLLSAMT--GIAR-FVQDKELKKIL-..RETD-..--GLGTEATRAGIIELLFKRGFLTKK.GRNIHSTET.GRILIQALPNI |
| TOP3_ECOLI/151-564 | SNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAG...................YQGVLSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVT-......PADER-----.-----FTAIWQPSEACEPY.....-QDEEGRLLHRPLAEHVVNRISGQP..AIVTSYNDKRESESAP.LPFSLSALQIEAAKRFGLSAQNVLDICQKLYET---.-HK---LITYPRSDCRYLPEEHFA.GRHAVMNAISVH--...........APDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPT----ARSSAIN--LTE....NEAKVYNLIARQYLMQFCPDAVFRKCVI.ELDIAK....GKFVAKARF...-LAEAGWRTLLGSKERDE-----ENDGTPL-PVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMT--GIAR-FVQDKDLKKIL-..RATD-..--GLGTEATRAGIIELLFKRGFLTKK.GRYIHSTDA.GKALFHSLPEM |
| Q60215_9ZZZZ/150-576 | DNREFAGLSAAAEARSVGDQLYGFNITRLYTLAARAKG...................YQGLLSVGRVQTPILGLVVRRCRENAAHQKTYYYLVNGQFEV-......-----EG---.---IQFPARYQVADGDP--.....-VDEKGRLSNKEHAEGIAAAVSGQP..ARIVSVTTKAKEAAAP.LPYNLLKLQMDASRKFGFKPDQVKDITQALREK---.-HK---LITYNRSDCEYLSEEQHG.DAPGVLAAIAQTAP...........MLAAAAQR-ANPTIKSRAFNSSKVSAHHAIIPT---ESTADLSK--LTD....AEQKIYLLIARAYVAQFWPKHLYDQTDV.LAQVGD....HRFGVRSN-...VTTSPGWKILYKNDAGNEDLEGNADDIEQDLRKLRDGQAGTCTDAKAEQQETKPQPLYTMESLLSDLTR--VAK-YIRDDRLRKILIekDKGKQgeHGGIGTPATRDSIIATLFERGYLVEK.GKHIVSTPT.GEELYDALPDT |
| P71196_ENTAE/153-572 | ENTTYAGWADAARGRQRADWLIGMNLSRAYTLRAQRGG...................SRALLTVGRVQTPTLALVVARDREIEAFKAVPYHTIRAVVQH-......------AG--.---GSFAAAWKAKEDQAG-.....-LYSEGRLVDTAVADALVAAVKGQP..GTIAAYKQEAKKQNQP.LAFALSDITALASAKFGYSAEDVLNTCQALYET---.-HK----LTCTRAPTAPTCRSR--.STPTRRACWRRSST...........STPTGRPGRWCRSAYQVQDVG-RLEDHRAPRHR-ADHAEGQQGRPQRAR....-AQHLRPDRARLPGAVLPAARVHADHRG.RSRFAG....ENFAASGK-...VVTRNGWRDVYSQADEEGEKDEDDDSGTQALPSMAQGDAVTCTDATRKDAKTKPPARFTEGTLIRAMEN--IHK-FVSDAEHKKML-..REGD-..--GIGTSATRASIISELKRREFLAVK.GKQIISTTL.GRSVIDALPEV |
| TOP1_BACAN/139-538 | SASKYDGLAYSAKARQYLDYLLGMNITRGCTTKLAQN-...................-KFLLSSGRVQMCLLHEIRQRELAIENYREQSYYHLQLITDL-......---GLKPV--.-----MKTEDQVLNPSPL-.....-KSLGENLKDQ---YLTVEDFKEG-..----------TRKQNPkLLYNLTDLYKDAHAQLQINAETAKKHIQNLYEEG--.------FITYPRSSSRHLPTEQVD.RVKGVMQALAKSRY...........SLLVQSVDIDAIDIKHKTFDDDLVSSHFAIIPT--TKQYQEEGRPEI--....-EKQLYSLVVKRFVGNFMRPAVYLVRDVsLIDAMG....NTYQIKES-...VLREKGFLEVFQE-EVKE-----ESVETFKVPILQKGQELQIYDFELQESKTKKPALHTESSILTFMET--AGR-KIDDEHLKELM-..-KGK-..--RIGTVATEAAFIPVLHEKNFIDIE.KGKIITTPI.GRAFIEQFPVQ |
| TOP3_YEAST/168-613 | PSRLDMKSVHAVGTRIEIDLRAGVTFTRLLTETLRNKLrnqatmtkdgakhrggnknDSQVVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLVVEN-......------KD--.-NGGTTTFQWDRGHLFDR-.....LSVLTFYETCIETAGNVAQVVDLKS..--------KPTTKYRP.LPLTTVELQKNCARYLRLNAKQSLDAAEKLYQKG--.------FISYPRTETDTFPHAMDLkSLVEKQAQLDQLAAggrtawasyaaSLLQPENTSNNNKFKFPRSGSHDDKAHPPIHPI---VSLGPEAN--VSP....VERRVYEYVARHFLACCSEDAKGQSMTL.VLDWAV....ERFSASGLV...-VLERNFLDVYPWA---------RWETTKQLPRLEMNALVDIAKAEMKAGTTAPPKPMTESELILLMDTNGIGTDATIAEHIDKIQ-..VRNYVr.SEKVGKETYLQPTTLGVSLVHGFEAIgLEDSFAKPFqRREMEQDLKKI |
| TP3A_HUMAN/193-595 | LTEPDQRVSDAVDVRQELDLRIGAAFTRFQTLRLQRIFpe...............vlAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVTHDH-......----------.-KDGIVEFNWKRHRLFN--.....-HTACLVLYQLCVEDPMATVVEVRS..--------KPKSKWRP.QALDTVELEKLASRKLRINAKETMRIAEKLYTQG--.------YISYPRTETNIFPRDLNL.TVLVEQQTPDPRWG...........AFAQSILE---RGGPTPRNGNKSDQAHPPIHPT----KYTN--N--LQG....DEQRLYEFIVRHFLACCSQDAQGQETTV.EIDIAQ....ERFVAHGLM...-ILARNYLDVYPY----------DHWSDKILPVYEQGSHFQPSTVEMVDGETSPPKLLTEADLIALMEKHGIGTDATHAEHIETIK-..ARMY-..-VGLTPDKRFLPGHLGMGLVEGYDSM.GYEMSKPDL.RAELEADLKLI |
| O25188_HELPY/121-542 | FSRSNTNLYQSFLGRIASDQVVGFALTSYLRKSLNLS-...................---ELSAGRVQTPALALICQRDQEIRDFDKLDAEEKVEYQIQ-......---ANIVCN-.-EKEAIIKHVRANEKN---.....-ELVDFKFKDKNEASQFLKDLKDGLgsMSVLVSLKESLSNKEPkKPFTTSKLLSQASKSLKIPTKEIAQLAQKLFEAG--.------LITYHRTDSEFLSPE---.YLKEHEVFFEPIYP...........SVYQYR-------EYKAGKNS-QAEAHEAIRITHPHALKDLEKVCSDAKiseeLALKLYQLIYTNTICSQSRNALYNQYDC.IFKIKS....ESFKLSFK-...LLKEKGFLEIEELIQGKEEINREEQESEIENFSLKENDSVPLKEVFIKKIEKPSPKPYKESAFIPLLESEGIGRPSTYASFLDLLL-..KRKY-..----ISIDTKTNAITPTSQGLEVISF.FKKDKEVDF.IALTSKDKSKL |
| TOP1_ARCFU/151-536 | PVKVDFNLANAALARQKIDLIWGATLTRLISVHSGRMG...................-KDFLSVGRVQTPTLRLIVDRELEIQNFKPEKYYEIFAEFEG-......----------.----FIAKHPKRYGS----.....-KEEAEKLFAKIGETAKVEEFTRRR..-------------MEEnRPTPFNTTEFLREASKFMSPHKAMNIAETLYMNG--.------YISYPRTDNTVYPPTIN-.LIEIVSALSSVFPR...........EAQIVLS----QDKITPSRGRRETKDHPPIYPT------GVAKRGELSK....DEWTIYELVVRRFLATLAPKAVWDVRRV.VLDSNG....VKFVANGRQ...-LVEAGWRDIYIY----------SKAEETELPLLKKGDVLRILKKRLEEKETKPPGRYSASSLIKMMEKLNLGTKSTRHEIIQKLVS..-RRY-..----IHGNPFRPSETAFSVINVLKET.AETITLPDM.TAKLENEMDLI |
| TOP1_METJA/153-547 | PDEIDYGLVDAGESRHILDWYFGINLSRALMNAIRAVN...................RWKTMSVGRVQGPALAFLTERELEIKKFIPKPYWVIEALLKD-......---N------.--LKAIHEKEKFWNEKE--.....AKNVYEKIKDEKSAKVVEIKKTKR-..---------K---LKPlPPFDLGTLQREAYSYFKISPKETQEIAQKLYEN---.-----ALISYPRTSSQKLPKDR-K.YLEDILNIIKNHPV...........YGKWAER--ILKENLKPVEGKKEDPAHPAIHIV---DIPKEELS--E-K....-EKEIYDLIARRTLAAFWDNAEREYLNV.KIDIKG....EKFKLSGSR...-TVKEGWHEIYYFP---------KFDEIEL-PPLKKNDIIKVEKITITRKETQPPKRYTVASIIKELEKRGLGTKATRAEIIDKLI-..KRGY-..---VIDDGSLKVTDLGISVIETLKRF.CPEIIDEKM.TRDLEEKLEKI |
| TOP1_METTH/158-549 | PIEVDYGQVDSGAARHILDFIFGVNISRSLMKSVKAAT..................nRFIKLSAGRVQTPTLAILVEREKEIRDFKPVPYWIIRAELGEG......----------.----IIAESKRGKIFKR--.....-ELVDSILEKCQGSDAEVKDVRVR-..---------D-TIRKPpVPFDLGTLQSEAYRVFGFSPKKTQTIAQNLYTEG--.------YTSYPRTSSQKLPES--I.GYEKILKNLAKNPR...........FGVHIER---LRGPLKPHEGKKEDDAHPAIHPT---GLLPSELS--K--....DEKKVYDLIVHRFISVFGEDAILQTMKV.ELEIGE....EEFSFSRKR...-VSKAGWMESYPY----------TKMEDEEFPEISGGDSLAVRSVSADERETKPPARYNEASLIRELERRGLGTKSTRADIIAKLY-..DRKY-..----IEGKKIRVSPLGENIIDTLTRY.CEKIISEEL.TRQFERELEDI |
| TOP1_MYCPN/146-581 | PREIDQSWVQSQFARQILDRMIGFRLS-RLLNNYLSA-...................----KSAGRVQSVALRFLEEREQEIRSFVPRFWWTLDVLLNP-......KAEGVREACAnRSIPIVLREINPALRAGLKf..eeEKSVSGIDFLDEASAKKFGEQLKGV..FEVYNIDETKHYSSSPnSAYTTASLQKDAINKLGWSSKKVTLIAQHLYEGVSI.NGEQTALISYPRTDSTRLSAQ---.FQQSCKEYILNHYG...........EKYLSNR---IVSAKGKKGEKIIQDAHEAIHPT-DINITPEMVKNAIKK....DEFLLYRLIWIRTVASLMADCKKSHTHI.RFINDG....NKFYASSKS...-LVFDGYRKIYEHFENKE-----SNDLYIDLDKIRVGDRFMAKDIKITARQTHPAARYTQASLIEALEKSNIGRPSTYNTMASVNL-..DRGY-..--ASLNKHAFHVTQLGEQVNEELSKH.FGKIINKEF.TKNMEKSLDEI |
| TOP1_MYCGE/139-575 | PRNIDLNWVESQFARQILDRMIGFRLS-RLLNSYLQA-...................----KSAGRVQSVALRFLEEREKEIAKFVPRFWWTVDVLLN--......KENNQKVVCAnKSIPLVLREINPELSASLKldfeaAENVSGIDFLNEASATRFANQLTGE..YEVYFIDEPKIYYSSPnPVYTTASLQKDAINKLGWSSKKVTMVAQRLYEGISV.NGKQTALISYPRTDSIRISNQ---.FQSECEKYIEKEFG...........SHYLADK---NKLKRHKKDEKIIQDAHEGIHPT-YITITPNDLKNGVKR....DEFLLYRLIWIRTVASLMADAKTSRTIV.RFINQK....NKFYTSSKS...-LLFDGYQRLYEEIKPNT-----KDELYIDLSKLKIGDKFSFEKISVNEHKTNPPPRYTQASLIEELEKSNIGRPSTYNTMASVNL-..ERGY-..--ANLVNRFFYITELGEKVNNELSKH.FGNVINKEF.TKKMEKSLDEI |
| TOP1_HELPY/125-530 | PRKIDMSKVNAQQARRFLDRIVGFKLSSLIASKITKG-...................----LSAGRVQSAALKLVIDKEREIKAFKPLTYFTLDAYFES-......---HLEAQLIsYKGNKLKAQELIDEKKAQ-.....-EIKNELEKESYAISSIVKKSKKS-..---------P----TP.PPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVAT.PQGVMGVITYMRTDSLNIAKE---.ALEEARNKILKDYG...........KDYLPPK----AKVYSSKNKN-AQEAHEAIRPT-SIILEPNALKDYLKP....EELRLYTLIYKRFLASQMQDALFESQSV.VVACEK....GEFKASGRK...-LLFDGYYKILG-----------NDDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQ-..NRDY-..--IKVEKKQISALESAFKVIEILEKH.FEEIVDSKF.SASLEEELDNI |
| TOP1_BACSU/125-536 | PRMINMDLVDAQQARRILDRLVGYKISPILWKKVKKG-...................----LSAGRVQSVALRLIIDREKEINDFKPEEYWTIDGTFLK-......GQETFEASFFgKNGKKLPLNSEADVK----.....-EILSQLKGNQYTVEKVTKKERKR-..--------------NPaLPFTTSTLQQEAARKLNFRAKKTMMIAQQLYEGIDLgREGTVGLITYMRTDSTRISNT---.AVDEAAAFIDQTYG...........KEFLGGK----RKP-AKKNEN-AQDAHEAIRPT-SVLRKPSELKAVLGR....DQMRLYKLIWERFVASQMAPAVLDTMSV.DLTNNG....LTFRANGSK...-VKFSGFMKVYVEGKDDQ-----MEEKDRMLPDLQEGDTVLSKDIEPEQHFTQPPPRYTEARLVKTLEERGIGRPSTYAPTLDTIQ-..RRGY-..--VALDNKRFVPTELGQIVLDLIMEF.FPEIINVEF.TAKMERDLDHV |
| TOP1_ECOLI/154-553 | PGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARG-...................----LSAGRVQSVAVRLVVEREREIKAFVPEEFWEVDASTTT-......--PSGEALALqVTHQNDKPFRPVNKE----.....-QTQAAVSLLEKARYSVLEREDKP-..-----------TTSKPgAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEA---.--G---YITYMRTDSTNLSQD---.AVNMVRGYISDNFG...........KKYLPES----PNQYASKENS--QEAHEAIRPS-DVNVMAESLKD-MEA....DAQKLYQLIWRQFVACQMTPAKYDSTTL.TVGAGD....FRLKARGR-...ILRFDGWTKVMP---ALR-----KGDEDRILPAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQ-..DRGY-..--VRVENRRFYAEKMGEIVTDRLEEN.FRELMNYDF.TAQMENSLDQV |
| TOP1_THEMA/126-521 | PREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFKSN-...................----LSAGRVQSATLKLVCDREREILRFVPKKYH----RITV-......NFDGLTAEID.VKEKKFFDAETLKEI----.....-QSIDELVVEE---KKVSVKKFAP-..---------P----E-.-PFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVET.KDGHIAFITYMRTDSTRVSDY---.AKEEARNLITEVFG...........EEYVG------SKRERRKSNAKIQDAHEAIRPT-NVFMTPEEAGKYLNS....DQKKLYELIWKRFLASQMKPSQYEETRF.VLRTKD....GKYRFKGT-...-VLKKI-FDGYEK-VWKT-----ERNTGEFPFEEGESVKPVVVKIE--EQETKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLL-..NRGY-..--IKKIRGYLYPTIVGSVVMDYLEKK.YSDVVSVSF.TAEMEKDLDEV |
| TOP1_FERIS/156-561 | PREIDMNKVNAQLARRVLDRIVGYMISPLLWRIIKDA-...................----RSAGRVQSAALKIICERERERYRFVPQKYF----KVWI-......DIAGLKAYLTkVDGKKIKPTDITEEISKDV.....LQKVKSVRLVD---IDVKEVRKNP-..---------P----A-.-PFITSTLQQDAASKLGFPVSKTMKIAQELYEGVDT.KEGHTAFITYMRTDSTRVSDV---.AKEAAEKFILKNFG...........REYLNES-SEVASKKGSKTKGKVQDAHECIRPV-DVNITPEKAKELLDK....DHHKLYELIWKRFIASQMSSAIYKQYSY.DFES--....GKYVFEAS-...-IRERI-FDGFEK-VYTI-----DNEPSEK-HKELKVDQEYLVEPKSAEAQTTPPDRYTEASLVKTLEMEGIGRPSTYATIIQTLL-..DRGY-..--VVKKRKTLIPTILGFVVNHYLEQR.FPDIVDKGF.TAEMEKELDEV |
| TOP1_SYNY3/137-561 | CRDIDENLVHAQETRRILDRLVGYTLSPLLWKKIAWG-...................----LSAGRVQSVAVRLIVQRERARRAFKTAGYWDLKAELEQ-......NKNPFQAKLMtLGGTKLANGSDFDPNTGAL.....LPDKQVVVLDEAQAIALKERLTGKP..WAVVNTEEKP-GVRKPsPPFTTSTLQQEANRKLGISARDTMRVAQKLYE----.-EG---YITYMRTDSVHLSDQ---.AVTAARNCVQQMYG...........KEYLSPQ----PKQYTTKSKG-AQEAHEAIRPAGTEFRIPNQTG--LKD....RELALYELIWKRTVACQMADARITQLSV.LLKVED....AEFRAAGKRidfPGYFRAYVEGSDDPDAAL-----ENQEVILPPLKVGDRPNCR-EIDTVGHETQPPARYTEASLVKTLESEGVGRPSTYASIIGTII-..DRGY-..--VQMRSKALTPTFTAFAVVSLLESH.FPDLVDTGF.TSRMEQKLDEI |
| TOP1_SYNP7/140-564 | CR--SAALVHAQETSQDSRSLGGLHPVGPALEKNCLG-...................----PIAGRVQSVAVRLLVQRERARRAFRQGSYWDLKAQLTV-......EAGQFEAKLWtLAGQRLATGNDFDESTGQI.....IAGRQVCLLDQQEAEALPIRRPDPA..LASKVAEEKPTHCANQrPPFTTSTLQQESNRKLRLSARETMRVAQSLYE----.-RG---FITYMRTDSVHLSQQ---.AIEAARSCVEQMYG...........KNYLSPQ----PRQFTTKSKN-AQEAHEAIRPAGNTFRLPQETG--LSG....AEFAVYDLIWKRTIASQMAEARQTMLSV.LLEVDN....AEFAPVASGsisRASSALSVEGSDDPDAAL-----EDPRNSAAGVEGCGSPHLSGTGRESVMKPQPPARYTEASLVKMLENEGIGRPSTYASIIGTIV-..DRGY-..--AQLVSNTLTPTFTAFAVTALLEQH.FPDLVDTSF.SARMEQSLDDI |
| TOP1_MYCTU/153-593 | PRDLDIDLVDAQETRRILDRLYGYEVSPVLWKKVAPK-...................----LSAGRVQSVATRIIVARERDRMAFRSAAYWDILAKLDASvsdpdaAPPTFSARLTaVAGRRVATGRDFDSLGTLR.....-KGDEVIVLDEGSATALAAGLDGTQ..LTVASAEEKP-YARRPyPPFMTSTLQQEASRKLRFSAERTMSIAQRLYEN---.--G---YITYMRTDSTTLSES---.AINAARTQARQLYG...........DEYVAPA----PRQYTRKVKN-AQEAHEAIRPAGETFATPDAVRRELDGp.niDDFRLYELIWQRTVASQMADARGMTLSL.RITGMSghqeVVFSATGRTltfPGFLKAYVETVDELVGGE-----ADDAERRLPHLTPGQRLDIVELTPDGHATNPPARYTEASLVKALEELGIGRPSTYSSIIKTIQ-..DRGY-..--VHKKGSALVPSWVAFAVTGLLEQH.FGRLVDYDF.TAAMEDELDEI |