EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01131 - Topoisom_bac)
DNA topoisomerase
(Pfam reference: accession no. PF01131)
(Interpro reference: accession no. IPR000380)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
23 sequences @ 520 aa
(ave. pairwise identity: 0.28)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 17.35)
nucleotides
(available for above)
22 sequences @ 1560 bp
(ave. pairwise identity: 0.40)
New Hampshire format
(total tree length: 11.61)
amino acids, restricted set
(corresp. to available nt seqs)
22 sequences @ 520 aa
(ave. pairwise identity: 0.29)
New Hampshire format
(total tree length: 15.96)