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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF01118 phylogeny
for nucleotide alignment


 
((((((((((((((((((((((((((((((USG_ECOLI/6-121,Q6LNU3_PHOPR/6-121),(DHAS_VIBCH/6-121,DHAS_SHESP/6-121)),Q83D66_COXBU/6-121),DHAS_LEGPN/6-121),((Q73GJ7_WOLPM/4-120,Q7PBF2_RICSI/6-121),Q6FYZ2_BARQU/4-119)),((DHAS_HELPY/5-121,(DHAS_CAMJE/6-123,Q7MAA7_WOLSU/5-122)),Q7VF05_HELHP/5-122)),(((Q7TU21_PROMP/13-128,DHAS_PROMA/13-128),(Q7TV81_PROMM/13-128,Q8DMP2_SYNEL/8-123)),(Q8EQT1_OCEIH/8-123,((Q71ZN3_LISMF/6-122,(DHAS_BACSU/6-121,Q6HIS1_BACHK/7-123)),((Q88X86_LACPL/6-121,DHAS_STRMU/4-119),Q76H90_LACPL/5-120))))),(((((Q891S4_CLOTE/6-123,Q8XJ57_CLOPE/3-120),Q8RBI4_THETN/4-120),Q8CP97_STAEP/3-119),DHAS_AQUAE/4-120),Q8VYI4_ARATH/40-155)),(Q7MWN2_PORGI/2-118,Q8A1M5_BACTN/2-118)),Q83FL4_TROWT/3-116),Q8GE46_HELMO/5-119),((Q8KB62_CHLTE/8-123,Q9X1L1_THEMA/4-120),(Q87DS3_XYLFT/11-126,DHAS_CORGL/3-121))),Q726Q8_DESVH/7-122),((Q7NUD3_CHRVO/6-121,(USG_AZOVI/6-120,(USG_PSEAE/6-120,Q88LE2_PSEPK/6-118))),Q9ABH4_CAUCR/4-119)),((Q82EQ4_STRAW/12-127,Q93Y73_ORYSA/40-156),(Q72L83_THET2/2-116,Q9RSW3_DEIRA/2-116))),((((DHAS_MYCSM/3-118,Q9RQ23_AMYMD/6-121),Q6AGY3_LEIXX/8-123),(DHAS_STRAK/2-113,Q9A2S1_CAUCR/12-127)),Q6AAZ2_PROAC/95-214)),((Q8G6Y8_BIFLO/6-138,(((DHAS_SCHPO/5-131,DHAS_YEAST/6-132),Q99103_USTMA/11-137),Q7SF95_NEUCR/8-134)),((((((DHAS_METJA/10-138,(((Q6KZA0_PICTO/5-131,Q971Y6_SULTO/6-132),((O84368_CHLTR/4-128,(Q822G8_CHLCV/2-126,Q9Z6L1_CHLPN/2-126)),((DHAS_LEPIN/5-133,Q6MC73_PARUW/13-137),(Q96YK1_SULTO/9-134,((O58815_PYRHO/2-123,(Q97LJ2_CLOAB/6-138,Q97N16_CLOAB/5-137)),Q9HL68_THEAC/5-129))))),Q6LXG0_METMP/4-132)),Q8PWG9_METMA/5-130),DHAS_ARCFU/4-129),DHAS_METTH/3-128),Q8ZUA4_PYRAE/5-130),(Q8TVK0_METKA/5-134,(Q9HPX0_HALN1/3-130,Q9YCW9_AERPE/2-130))))),(((Q84DI0_9ACTO/8-120,Q99Q18_STRCO/8-123),(O85978_SPHAR/5-121,(((Q8KZT1_RHOSR/5-117,P71866_MYCTU/6-119),(O24832_ACISP/6-121,Q52039_PSEPS/6-121)),((((Q8XRG0_RALSO/6-122,(Q51982_PSEPU/9-125,Q83V30_PSEFL/8-124)),MHPF_ECOLI/5-123),Q6RES3_9NOCA/4-120),(Q6D797_ERWCT/9-122,(Q764S1_9BACI/6-119,(Q739I5_BACC1/5-119,Q9LAF6_BACTR/4-117))))))),((Q7BUE1_AMYMD/4-109,Q8GNN1_STRHY/4-108),((Q6SGJ6_9BACT/3-123,Q88UA3_LACPL/3-111),Q8YPT5_ANASP/3-112)))),(((((ARGC_CHLTE/12-143,(ARGC_STRCO/4-138,ARGC_STRCL/4-137)),Q72ES7_DESVH/5-146),(((((Q6SGL0_9BACT/3-141,ARGC_PSESM/3-142),(Q6FCI4_ACIAD/3-141,ARGC_NITEU/3-141)),ARGC_CHRVO/3-141),ARGC_BORPE/10-148),ARGC_NEIMA/6-144)),((ARGC_THET2/1-134,ARGC_WOLSU/5-141),((((ARGC_METKA/3-144,(ARGC_PYRAE/2-142,((ARGC_METMA/6-141,ARGC_ARCFU/2-136),((ARGC_PYRHO/3-134,Q6KYZ5_PICTO/2-141),Q6M102_METMP/3-141)))),(ARGC2_THET2/5-140,ARGC_AERPE/6-145)),ARGC_RHOBA/7-146),((((ARGC_THETN/3-141,(O82187_ARATH/18-155,((ARGC_CLOAB/3-143,ARGC_CAMJE/4-139),(((((ARGC_MORAB/3-148,ARGC_SHEON/3-147),((ARGC_VIBVU/3-146,ARGC_PASMU/3-147),((ARGC_ECOLI/3-146,ARGC_PHOLL/3-146),Q6LVH0_PHOPR/3-146))),(ARGC_BUCAI/3-146,ARGC_BUCAP/3-146)),((ARGC_OCEIH/3-141,((ARGC_BACSU/2-141,ARGC_BACHD/2-141),Q6HE28_BACHK/2-141)),Q71Z76_LISMF/2-140)),(ARGC_AQUAE/6-143,ARGC_LEPIN/3-140))))),(ARGC_THEMA/3-137,ARGC_THENE/3-137)),(ARGC2_LACPL/2-140,(ARGC_GLOVI/6-145,(((ARGC_NOSEL/8-147,ARGC_SYNEL/6-145),ARGC_SYNY3/7-146),(ARGC_SYNPX/8-152,(ARGC_PROMP/2-146,ARGC_PROMA/10-154)))))),(Q748X6_GEOSL/3-141,Q6ANM0_DESPS/3-141))))),((ARGC_CAUCR/6-107,(ARGC_RHILO/4-105,(ARGC_BRUSU/4-109,ARGC_AGRT5/4-106))),(((((((Q6BLU1_DEBHA/527-653,(ARG56_YEAST/542-667,Q6FPK4_CANGA/552-677)),ARG56_SCHPO/572-695),Q6CE87_YARLI/541-666),Q75AI9_ASHGO/535-660),ARG56_NEUCR/554-681),ARGC_BACTN/3-124),(ARGC_XYLFT/7-128,ARGC_XANCP/7-128))))),Q748X3_GEOSL/2-119),O87013_PSEAE/3-122),DHAS_BORPE/4-123),DHAS_NEIMB/2-122),DHAS_SALTY/3-123),(Q6AJI4_DESPS/7-125,Q82WI5_NITEU/3-122)),(Q6LP18_PHOPR/3-122,Q6FEU9_ACIAD/2-122)),Q8G8T4_FRATU/3-122),(Q8D2B1_WIGBR/3-122,Q7VRN0_CANBF/3-124)),DHAS_BUCBP/4-124),DHAS_BUCAI/4-124,DHAS_BUCAP/4-124);
((((((((((((((((((((((((((((((USG_ECOLI/6-121:0.39060,Q6LNU3_PHOPR/6-121:0.24398):0.09791,(DHAS_VIBCH/6-121:0.22100,DHAS_SHESP/6-121:0.23181):0.05852):0.11914,Q83D66_COXBU/6-121:0.29703):0.06389,DHAS_LEGPN/6-121:0.26181):0.07131,((Q73GJ7_WOLPM/4-120:0.34858,Q7PBF2_RICSI/6-121:0.22382):0.13556,Q6FYZ2_BARQU/4-119:0.47822):0.07772):0.08658,((DHAS_HELPY/5-121:0.32204,(DHAS_CAMJE/6-123:0.19207,Q7MAA7_WOLSU/5-122:0.23640):0.06583):0.04996,Q7VF05_HELHP/5-122:0.18524):0.16186):0.09042,(((Q7TU21_PROMP/13-128:0.29039,DHAS_PROMA/13-128:0.18959):0.10272,(Q7TV81_PROMM/13-128:0.22862,Q8DMP2_SYNEL/8-123:0.38144):0.14390):0.15128,(Q8EQT1_OCEIH/8-123:0.19376,((Q71ZN3_LISMF/6-122:0.22427,(DHAS_BACSU/6-121:0.22992,Q6HIS1_BACHK/7-123:0.25821):0.04207):0.08730,((Q88X86_LACPL/6-121:0.39922,DHAS_STRMU/4-119:0.17664):0.10543,Q76H90_LACPL/5-120:0.24796):0.07279):0.02478):0.12148):0.04334):0.03650,(((((Q891S4_CLOTE/6-123:0.27358,Q8XJ57_CLOPE/3-120:0.17920):0.04774,Q8RBI4_THETN/4-120:0.22910):0.03546,Q8CP97_STAEP/3-119:0.44721):0.05367,DHAS_AQUAE/4-120:0.29181):0.06828,Q8VYI4_ARATH/40-155:0.43527):0.04730):0.07888,(Q7MWN2_PORGI/2-118:0.30233,Q8A1M5_BACTN/2-118:0.18834):0.18100):0.05988,Q83FL4_TROWT/3-116:0.48318):0.09875,Q8GE46_HELMO/5-119:0.27070):0.10860,((Q8KB62_CHLTE/8-123:0.19049,Q9X1L1_THEMA/4-120:0.42187):0.14533,(Q87DS3_XYLFT/11-126:0.33741,DHAS_CORGL/3-121:0.26514):0.11253):0.03086):0.07461,Q726Q8_DESVH/7-122:0.23488):0.08548,((Q7NUD3_CHRVO/6-121:0.30982,(USG_AZOVI/6-120:0.25382,(USG_PSEAE/6-120:0.27148,Q88LE2_PSEPK/6-118:0.21843):0.08511):0.09653):0.11341,Q9ABH4_CAUCR/4-119:0.30343):0.09320):0.02011,((Q82EQ4_STRAW/12-127:0.33783,Q93Y73_ORYSA/40-156:0.24625):0.06076,(Q72L83_THET2/2-116:0.27979,Q9RSW3_DEIRA/2-116:0.22307):0.15585):0.04306):0.02538,((((DHAS_MYCSM/3-118:0.23595,Q9RQ23_AMYMD/6-121:0.13257):0.06873,Q6AGY3_LEIXX/8-123:0.19540):0.04626,(DHAS_STRAK/2-113:0.18182,Q9A2S1_CAUCR/12-127:0.16298):0.04291):0.02724,Q6AAZ2_PROAC/95-214:0.31450):0.07638):0.18892,((Q8G6Y8_BIFLO/6-138:0.30798,(((DHAS_SCHPO/5-131:0.30771,DHAS_YEAST/6-132:0.27865):0.09051,Q99103_USTMA/11-137:0.44336):0.10125,Q7SF95_NEUCR/8-134:0.24138):0.15406):0.03796,((((((DHAS_METJA/10-138:0.13914,(((Q6KZA0_PICTO/5-131:0.33639,Q971Y6_SULTO/6-132:0.16525):0.15500,((O84368_CHLTR/4-128:0.29422,(Q822G8_CHLCV/2-126:0.27553,Q9Z6L1_CHLPN/2-126:0.20134):0.05819):0.36308,((DHAS_LEPIN/5-133:0.30727,Q6MC73_PARUW/13-137:0.37061):0.13416,(Q96YK1_SULTO/9-134:0.38648,((O58815_PYRHO/2-123:0.43018,(Q97LJ2_CLOAB/6-138:0.20630,Q97N16_CLOAB/5-137:0.25751):0.14719):0.06643,Q9HL68_THEAC/5-129:0.59609):0.04968):0.04540):0.04270):0.04424):0.10903,Q6LXG0_METMP/4-132:0.18575):0.09786):0.18841,Q8PWG9_METMA/5-130:0.22121):0.08305,DHAS_ARCFU/4-129:0.19261):0.09413,DHAS_METTH/3-128:0.24476):0.14369,Q8ZUA4_PYRAE/5-130:0.36910):0.10083,(Q8TVK0_METKA/5-134:0.18375,(Q9HPX0_HALN1/3-130:0.24378,Q9YCW9_AERPE/2-130:0.36652):0.11617):0.04045):0.04248):0.14355):0.09072,(((Q84DI0_9ACTO/8-120:0.31677,Q99Q18_STRCO/8-123:0.26040):0.14008,(O85978_SPHAR/5-121:0.33567,(((Q8KZT1_RHOSR/5-117:0.40101,P71866_MYCTU/6-119:0.22572):0.11481,(O24832_ACISP/6-121:0.27576,Q52039_PSEPS/6-121:0.16314):0.12858):0.07921,((((Q8XRG0_RALSO/6-122:0.16869,(Q51982_PSEPU/9-125:0.24026,Q83V30_PSEFL/8-124:0.26773):0.04515):0.06468,MHPF_ECOLI/5-123:0.30029):0.02595,Q6RES3_9NOCA/4-120:0.26799):0.04090,(Q6D797_ERWCT/9-122:0.46197,(Q764S1_9BACI/6-119:0.25842,(Q739I5_BACC1/5-119:0.32692,Q9LAF6_BACTR/4-117:0.20423):0.14720):0.13449):0.24800):0.03680):0.04369):0.10646):0.17557,((Q7BUE1_AMYMD/4-109:0.13740,Q8GNN1_STRHY/4-108:0.16108):0.22302,((Q6SGJ6_9BACT/3-123:1.15311,Q88UA3_LACPL/3-111:0.51574):0.14344,Q8YPT5_ANASP/3-112:0.67706):0.46715):0.12530):0.10194):0.05397,(((((ARGC_CHLTE/12-143:0.47518,(ARGC_STRCO/4-138:0.14266,ARGC_STRCL/4-137:0.26057):0.22220):0.13167,Q72ES7_DESVH/5-146:0.32854):0.04245,(((((Q6SGL0_9BACT/3-141:0.38668,ARGC_PSESM/3-142:0.17137):0.07547,(Q6FCI4_ACIAD/3-141:0.31912,ARGC_NITEU/3-141:0.16474):0.23179):0.07942,ARGC_CHRVO/3-141:0.14503):0.07006,ARGC_BORPE/10-148:0.16837):0.05959,ARGC_NEIMA/6-144:0.27925):0.07252):0.04006,((ARGC_THET2/1-134:0.22098,ARGC_WOLSU/5-141:0.56712):0.10498,((((ARGC_METKA/3-144:0.31364,(ARGC_PYRAE/2-142:0.37886,((ARGC_METMA/6-141:0.37006,ARGC_ARCFU/2-136:0.26980):0.10087,((ARGC_PYRHO/3-134:0.28181,Q6KYZ5_PICTO/2-141:0.37742):0.08031,Q6M102_METMP/3-141:0.35429):0.09490):0.05322):0.12859):0.02015,(ARGC2_THET2/5-140:0.37592,ARGC_AERPE/6-145:0.42364):0.10713):0.07062,ARGC_RHOBA/7-146:0.46445):0.03709,((((ARGC_THETN/3-141:0.27865,(O82187_ARATH/18-155:0.50191,((ARGC_CLOAB/3-143:0.44686,ARGC_CAMJE/4-139:0.30770):0.07921,(((((ARGC_MORAB/3-148:0.24269,ARGC_SHEON/3-147:0.49955):0.09109,((ARGC_VIBVU/3-146:0.32106,ARGC_PASMU/3-147:0.24938):0.10291,((ARGC_ECOLI/3-146:0.29076,ARGC_PHOLL/3-146:0.16899):0.13053,Q6LVH0_PHOPR/3-146:0.20000):0.07098):0.04822):0.07347,(ARGC_BUCAI/3-146:0.18158,ARGC_BUCAP/3-146:0.10426):0.23968):0.15114,((ARGC_OCEIH/3-141:0.37495,((ARGC_BACSU/2-141:0.35072,ARGC_BACHD/2-141:0.26981):0.15448,Q6HE28_BACHK/2-141:0.22879):0.08372):0.02078,Q71Z76_LISMF/2-140:0.39416):0.11089):0.08103,(ARGC_AQUAE/6-143:0.42716,ARGC_LEPIN/3-140:0.47386):0.10333):0.07570):0.12251):0.08284):0.17459,(ARGC_THEMA/3-137:0.22978,ARGC_THENE/3-137:0.21150):0.12265):0.16355,(ARGC2_LACPL/2-140:0.75316,(ARGC_GLOVI/6-145:0.30192,(((ARGC_NOSEL/8-147:0.28815,ARGC_SYNEL/6-145:0.23631):0.09642,ARGC_SYNY3/7-146:0.22419):0.08225,(ARGC_SYNPX/8-152:0.32754,(ARGC_PROMP/2-146:0.30430,ARGC_PROMA/10-154:0.23409):0.33953):0.22659):0.09597):0.08546):0.09235):0.14835,(Q748X6_GEOSL/3-141:0.39860,Q6ANM0_DESPS/3-141:0.37596):0.05965):0.05718):0.05263):0.06391):0.08011,((ARGC_CAUCR/6-107:0.11978,(ARGC_RHILO/4-105:0.19886,(ARGC_BRUSU/4-109:0.18622,ARGC_AGRT5/4-106:0.15646):0.10368):0.09357):0.35704,(((((((Q6BLU1_DEBHA/527-653:0.24294,(ARG56_YEAST/542-667:0.16182,Q6FPK4_CANGA/552-677:0.17347):0.12043):0.09486,ARG56_SCHPO/572-695:0.29930):0.13398,Q6CE87_YARLI/541-666:0.13789):0.10894,Q75AI9_ASHGO/535-660:0.32978):0.06647,ARG56_NEUCR/554-681:0.25471):0.19080,ARGC_BACTN/3-124:0.56474):0.08512,(ARGC_XYLFT/7-128:0.27373,ARGC_XANCP/7-128:0.16012):0.15744):0.09248):0.06284):0.10989):0.38546,Q748X3_GEOSL/2-119:0.19812):0.10031,O87013_PSEAE/3-122:0.16589):0.02850,DHAS_BORPE/4-123:0.19194):0.07209,DHAS_NEIMB/2-122:0.25551):0.08489,DHAS_SALTY/3-123:0.18516):0.07914,(Q6AJI4_DESPS/7-125:0.26564,Q82WI5_NITEU/3-122:0.19953):0.05780):0.14221,(Q6LP18_PHOPR/3-122:0.23202,Q6FEU9_ACIAD/2-122:0.38947):0.06023):0.07217,Q8G8T4_FRATU/3-122:0.31914):0.12173,(Q8D2B1_WIGBR/3-122:0.29972,Q7VRN0_CANBF/3-124:0.25771):0.07436):0.04970,DHAS_BUCBP/4-124:0.31601):0.08967,DHAS_BUCAI/4-124:0.09901,DHAS_BUCAP/4-124:0.13690);