EMBL-EBI > Goldman Group

PANDIT Home | Browse PANDIT | Help on PANDIT | Release notes | Pfam



PANDIT Homepage
pan•dit
PANDIT
Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF01041 - DegT_DnrJ_EryC1)
DegT/DnrJ/EryC1/StrS aminotransferase family
(Pfam reference: accession no. PF01041)
(Interpro reference: accession no. IPR000653)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
38 sequences @ 473 aa
(ave. pairwise identity: 0.31)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 24.33)
nucleotides
(available for above)
37 sequences @ 1419 bp
(ave. pairwise identity: 0.42)
New Hampshire format
(total tree length: 16.01)
amino acids, restricted set
(corresp. to available nt seqs)
37 sequences @ 473 aa
(ave. pairwise identity: 0.30)
New Hampshire format
(total tree length: 23.76)