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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00993 - MHC_II_alpha)
Class II histocompatibility antigen, alpha domain
(Pfam reference: accession no. PF00993)
(Interpro reference: accession no. IPR001003)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
51 sequences @ 85 aa
(ave. pairwise identity: 0.39)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 18.60)
nucleotides
(available for above)
50 sequences @ 255 bp
(ave. pairwise identity: 0.53)
New Hampshire format
(total tree length: 11.13)
amino acids, restricted set
(corresp. to available nt seqs)
50 sequences @ 85 aa
(ave. pairwise identity: 0.39)
New Hampshire format
(total tree length: 18.27)