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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00969 phylogeny
for restricted amino acid alignment


 
((((((((((((((Q30217_HUMAN/8-82,O19288_MACMU/6-80),O19287_MACMU/6-80),(((Q30461_HORSE/4-78,(((O19364_FELCA/5-79,(O19382_FELCA/5-79,O19396_FELCA/5-79)),O19378_FELCA/5-79),O19229_DAMDA/5-79)),((P79966_CAPAE/4-78,((Q30282_BOVIN/5-79,Q30812_SHEEP/4-78),O19211_CAPHI/8-82)),O18945_BOSIN/5-79)),Q30513_GALMO/8-81)),(((Q30854_OTOGA/8-82,2B32_HUMAN/42-116),O19291_MACMU/6-80),(2B17_HUMAN/42-116,Q30661_MACMU/6-80))),((Q31244_MUSSA/8-81,HB2K_HUMAN/42-116),O19298_9PRIM/6-79)),(O19231_DELLE/5-79,O19236_DELLE/5-79)),(O19253_CANFA/6-79,((O19279_MACMU/6-80,HB2D_CANFA/42-116),O19220_RANTA/5-79))),((((((((Q31459_MORSA/28-103,Q31463_MORSA/28-103),Q31462_MORSA/28-103),(Q08606_AULHA/25-100,Q08608_AULHA/24-99)),Q08611_CYPFR/23-98),(((Q08607_CYPFR/25-100,Q08609_CYPFR/25-100),Q31514_POERE/27-102),Q31334_AULHA/8-83)),(((Q31590_SALSA/27-102,Q31589_SALSA/41-115),Q31487_ONCMY/30-105),((Q31358_BRARE/26-101,(Q31375_CYPCA/31-106,Q31376_CYPCA/25-100)),((Q31354_BRARE/29-104,Q31369_BRARE/31-106),Q31377_CYPCA/25-100)))),(((Q31431_9PASS/37-110,Q31432_9PASS/37-111),(Q31392_CARME/16-90,(Q31390_CARME/16-90,(Q31339_AGEPH/16-90,Q31341_AGEPH/16-90)))),((Q31314_APHCE/16-90,(Q31316_APHCE/16-90,(Q31311_APHCE/16-90,(Q31315_APHCE/16-90,Q31320_APHCE/16-90)))),Q31391_CARME/16-90))),((O19493_CHICK/8-82,O19492_CHICK/8-82),(O19494_CHICK/8-82,(O19491_CHICK/8-82,(O19495_CHICK/8-82,O19500_CHICK/8-82)))))),((((O02877_MUSCO/9-83,(Q30539_LORTA/8-82,((Q30763_MACRG/27-101,O02896_MOUSE/9-83),HB21_MOUSE/40-114))),O02879_MUSCR/9-83),((O19218_MONDO/42-116,O02909_MUSPL/9-83),((Q30540_LORTA/8-82,Q30765_MACRG/42-116),(O02908_MUSMA/9-83,(HB2D_RAT/40-114,Q31270_RAT/21-95))))),(Q30856_OTOGA/8-82,Q30858_OTOGA/8-82))),((((P79597_XENLA/33-107,Q06743_XENLA/41-115),(Q06742_XENLA/41-115,Q06745_XENLA/42-116)),P79466_BOVIN/8-82),(Q30764_MACRG/42-116,(((O35424_MOUSE/39-113,2DOB_HUMAN/39-113),Q30827_SHEEP/39-113),Q95399_BOVIN/8-82)))),(((O19246_CANFA/5-79,((P79447_BOVIN/5-79,(Q30458_HORSE/41-115,(((Q30694_MACMU/5-79,O02712_MACMU/5-79),((Q30338_CERAE/5-79,Q29922_HUMAN/8-82),((P79456_BOVIN/5-79,P79455_BOVIN/5-78),((HB22_HUMAN/45-119,Q30554_MACAR/5-79),P79442_BOVIN/5-79)))),HB21_HUMAN/45-119))),HB2C_PIG/45-119)),((Q31140_MOUSE/8-80,(Q31136_MOUSE/8-80,Q31292_9MURI/7-79)),HB2A_MOUSE/40-114)),((HB21_SPAEH/42-114,HB2A_RAT/8-82),(O19274_SAGOE/6-78,(HB2P_RABIT/43-113,HB2P_HUMAN/42-114))))),Q29783_HUMAN/8-82),(2DMB_HUMAN/27-106,Q30262_BOVIN/26-105)),P70238_MOUSE/27-106,Q31253_RAT/9-88);
((((((((((((((Q30217_HUMAN/8-82:0.92224,O19288_MACMU/6-80:0.00579):0.10401,O19287_MACMU/6-80:0.17174):0.04777,(((Q30461_HORSE/4-78:0.22753,(((O19364_FELCA/5-79:0.14312,(O19382_FELCA/5-79:0.11522,O19396_FELCA/5-79:0.14435):0.06661):0.06488,O19378_FELCA/5-79:0.12455):0.10536,O19229_DAMDA/5-79:0.06479):0.02899):0.05308,((P79966_CAPAE/4-78:0.17149,((Q30282_BOVIN/5-79:0.16801,Q30812_SHEEP/4-78:0.08854):0.03874,O19211_CAPHI/8-82:0.13849):0.03333):0.00000,O18945_BOSIN/5-79:0.13510):0.01640):0.02370,Q30513_GALMO/8-81:0.16339):0.01990):0.00948,(((Q30854_OTOGA/8-82:0.43980,2B32_HUMAN/42-116:0.03961):0.03742,O19291_MACMU/6-80:0.16701):0.01377,(2B17_HUMAN/42-116:0.14662,Q30661_MACMU/6-80:0.12940):0.05944):0.03104):0.01452,((Q31244_MUSSA/8-81:0.46148,HB2K_HUMAN/42-116:0.09112):0.08637,O19298_9PRIM/6-79:0.22375):0.05436):0.01744,(O19231_DELLE/5-79:0.18731,O19236_DELLE/5-79:0.07655):0.12841):0.06929,(O19253_CANFA/6-79:0.15364,((O19279_MACMU/6-80:0.37139,HB2D_CANFA/42-116:0.07965):0.03398,O19220_RANTA/5-79:0.23125):0.00000):0.01877):0.01491,((((((((Q31459_MORSA/28-103:0.11672,Q31463_MORSA/28-103:0.19718):0.08485,Q31462_MORSA/28-103:0.14544):0.09386,(Q08606_AULHA/25-100:0.18014,Q08608_AULHA/24-99:0.13083):0.01245):0.08476,Q08611_CYPFR/23-98:0.21277):0.04444,(((Q08607_CYPFR/25-100:0.23763,Q08609_CYPFR/25-100:0.15499):0.03717,Q31514_POERE/27-102:0.27698):0.07822,Q31334_AULHA/8-83:0.18553):0.04634):0.23975,(((Q31590_SALSA/27-102:0.06674,Q31589_SALSA/41-115:0.22334):0.02914,Q31487_ONCMY/30-105:0.15953):0.15683,((Q31358_BRARE/26-101:0.42232,(Q31375_CYPCA/31-106:0.11575,Q31376_CYPCA/25-100:0.11829):0.07982):0.12197,((Q31354_BRARE/29-104:0.11026,Q31369_BRARE/31-106:0.14920):0.13685,Q31377_CYPCA/25-100:0.23255):0.27001):0.18532):0.16028):0.53801,(((Q31431_9PASS/37-110:0.20103,Q31432_9PASS/37-111:0.18062):0.07664,(Q31392_CARME/16-90:0.07737,(Q31390_CARME/16-90:0.18171,(Q31339_AGEPH/16-90:0.21248,Q31341_AGEPH/16-90:0.15361):0.17490):0.03637):0.05909):0.05594,((Q31314_APHCE/16-90:0.23244,(Q31316_APHCE/16-90:0.09137,(Q31311_APHCE/16-90:0.19199,(Q31315_APHCE/16-90:0.18497,Q31320_APHCE/16-90:0.15560):0.08595):0.06513):0.06409):0.04193,Q31391_CARME/16-90:0.19938):0.06429):0.11338):0.12394,((O19493_CHICK/8-82:0.10655,O19492_CHICK/8-82:0.12532):0.04963,(O19494_CHICK/8-82:0.18183,(O19491_CHICK/8-82:0.09954,(O19495_CHICK/8-82:0.13259,O19500_CHICK/8-82:0.15008):0.07308):0.04508):0.01900):0.17535):0.14872):0.01954,((((O02877_MUSCO/9-83:0.11569,(Q30539_LORTA/8-82:0.18226,((Q30763_MACRG/27-101:0.26625,O02896_MOUSE/9-83:0.08191):0.04767,HB21_MOUSE/40-114:0.12051):0.04013):0.01061):0.03144,O02879_MUSCR/9-83:0.14488):0.02859,((O19218_MONDO/42-116:0.32233,O02909_MUSPL/9-83:0.08275):0.05126,((Q30540_LORTA/8-82:0.15817,Q30765_MACRG/42-116:0.18223):0.05615,(O02908_MUSMA/9-83:0.16510,(HB2D_RAT/40-114:0.17629,Q31270_RAT/21-95:0.06533):0.05949):0.06479):0.01566):0.02401):0.02800,(Q30856_OTOGA/8-82:0.10562,Q30858_OTOGA/8-82:0.16837):0.08894):0.05578):0.05708,((((P79597_XENLA/33-107:0.17499,Q06743_XENLA/41-115:0.18188):0.06860,(Q06742_XENLA/41-115:0.25090,Q06745_XENLA/42-116:0.02498):0.12481):0.19953,P79466_BOVIN/8-82:0.38737):0.02653,(Q30764_MACRG/42-116:0.20255,(((O35424_MOUSE/39-113:0.17112,2DOB_HUMAN/39-113:0.09326):0.10006,Q30827_SHEEP/39-113:0.05615):0.28005,Q95399_BOVIN/8-82:0.30961):0.10097):0.03396):0.08400):0.04586,(((O19246_CANFA/5-79:0.23597,((P79447_BOVIN/5-79:0.09395,(Q30458_HORSE/41-115:0.13479,(((Q30694_MACMU/5-79:0.15998,O02712_MACMU/5-79:0.12715):0.07975,((Q30338_CERAE/5-79:0.19605,Q29922_HUMAN/8-82:0.08206):0.05052,((P79456_BOVIN/5-79:0.20751,P79455_BOVIN/5-78:0.22566):0.05488,((HB22_HUMAN/45-119:0.14993,Q30554_MACAR/5-79:0.14356):0.08055,P79442_BOVIN/5-79:0.13373):0.01793):0.01299):0.00000):0.03895,HB21_HUMAN/45-119:0.12907):0.03129):0.02892):0.01937,HB2C_PIG/45-119:0.19721):0.04278):0.02824,((Q31140_MOUSE/8-80:0.13937,(Q31136_MOUSE/8-80:0.18084,Q31292_9MURI/7-79:0.14526):0.06465):0.03015,HB2A_MOUSE/40-114:0.09287):0.03813):0.04889,((HB21_SPAEH/42-114:0.29877,HB2A_RAT/8-82:0.20636):0.09165,(O19274_SAGOE/6-78:0.19834,(HB2P_RABIT/43-113:0.29553,HB2P_HUMAN/42-114:0.14330):0.01322):0.11487):0.00000):0.01099):0.68299,Q29783_HUMAN/8-82:0.61227):2.17749,(2DMB_HUMAN/27-106:0.10339,Q30262_BOVIN/26-105:0.31305):0.16630):0.00000,P70238_MOUSE/27-106:0.11105,Q31253_RAT/9-88:0.15128);