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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00969 - MHC_II_beta)
Class II histocompatibility antigen, beta domain
(Pfam reference: accession no. PF00969)
(Interpro reference: accession no. IPR000353)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
121 sequences @ 84 aa
(ave. pairwise identity: 0.46)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 32.44)
nucleotides
(available for above)
119 sequences @ 252 bp
(ave. pairwise identity: 0.61)
New Hampshire format
(total tree length: 17.13)
amino acids, restricted set
(corresp. to available nt seqs)
119 sequences @ 84 aa
(ave. pairwise identity: 0.46)
New Hampshire format
(total tree length: 31.63)