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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00961 phylogeny
for nucleotide alignment


 
(((((((((((((Q35928_SCLSC/138-237,(Q35135_NEUCR/140-242,Q02692_PODAN/142-244)),((O20959_CRYPA/46-148,Q35134_NEUCR/70-173),Q02690_PODAN/82-183)),(Q02694_PODAN/137-239,Q02693_PODAN/59-160)),(YMN3_PODAN/147-247,(Q33639_AGRAE/112-212,O20960_CRYPA/128-228))),(((Q35809_YEAST/321-427,Q02676_PODAN/204-294),RGYR_METJA/1152-1249),((Q37038_ACACA/18-124,Q35689_PROWI/116-205),Q02683_PODAN/191-287))),(((((Q35134_NEUCR/240-335,Q02690_PODAN/239-346),O20959_CRYPA/205-321),(Q35928_SCLSC/294-393,(Q02693_PODAN/220-321,(((O20960_CRYPA/287-391,Q33639_AGRAE/269-392),(Q02692_PODAN/304-404,Q35135_NEUCR/300-401)),(YMN3_PODAN/304-405,Q02694_PODAN/296-398))))),((Q02673_PODAN/152-246,(Q35136_NEUCR/179-276,Q33761_ALLMA/202-303)),((((Q02680_PODAN/145-256,(Q33795_EMENI/185-291,Q02687_PODAN/214-319)),Q02679_PODAN/177-283),(Q02678_PODAN/149-270,Q02686_PODAN/199-322)),((YMC2_SCHPO/201-296,Q33796_EMENI/194-303),(Q02684_PODAN/188-286,Q34833_KLULA/177-290))))),((Q02696_PODAN/261-371,(Q02704_PODAN/265-380,O20958_CRYPA/222-334)),(Q37060_ACACA/8-112,Q39562_9CHLO/8-109)))),((DNE1_CHLRE/13-111,Q36978_ACACA/17-116),Q35690_PROWI/127-230)),(Q36232_WILSA/59-157,((((Q34805_HANWI/208-301,(Q02682_PODAN/193-283,O21044_DICDI/119-216)),(Q34835_KLULA/143-237,(Q02676_PODAN/69-165,O21045_DICDI/13-109))),((Q34833_KLULA/60-150,(Q02683_PODAN/72-162,((Q33761_ALLMA/88-176,Q02673_PODAN/44-130),Q35136_NEUCR/64-156))),((((Q02689_PODAN/158-245,Q02682_PODAN/87-174),((O20953_PEPGR/55-143,O21043_DICDI/26-112),((SCE2_YEAST/328-415,MBI4_YEAST/408-495),Q34805_HANWI/102-189))),Q35689_PROWI/10-100),((Q33795_EMENI/66-167,Q02687_PODAN/93-191),Q33796_EMENI/83-169)))),Q35102_METSE/102-200))),((((DNE1_CHLEU/59-164,O20957_CRYPA/30-135),(Q02695_PODAN/90-184,Q02696_PODAN/126-217)),(O20958_CRYPA/62-164,(Q36465_OPHNO/18-117,Q35375_PODAN/13-112))),Q02704_PODAN/111-210)),YMC1_SCHPO/111-210),YXT1_YEAST/2-97),Q36758_YEAST/125-227),Q36230_WILMR/60-204,Q36563_WILSA/60-205);
(((((((((((((Q35928_SCLSC/138-237:0.36629,(Q35135_NEUCR/140-242:0.13137,Q02692_PODAN/142-244:0.19979):0.16813):0.10607,((O20959_CRYPA/46-148:0.45941,Q35134_NEUCR/70-173:0.25142):0.06382,Q02690_PODAN/82-183:0.34978):0.04847):0.04287,(Q02694_PODAN/137-239:0.26903,Q02693_PODAN/59-160:0.26866):0.09897):0.05008,(YMN3_PODAN/147-247:0.26110,(Q33639_AGRAE/112-212:0.29117,O20960_CRYPA/128-228:0.27194):0.06101):0.08409):0.07647,(((Q35809_YEAST/321-427:0.41931,Q02676_PODAN/204-294:0.46946):0.05949,RGYR_METJA/1152-1249:0.79952):0.09152,((Q37038_ACACA/18-124:0.51635,Q35689_PROWI/116-205:0.50195):0.04099,Q02683_PODAN/191-287:0.34350):0.13470):0.09942):0.06301,(((((Q35134_NEUCR/240-335:0.31538,Q02690_PODAN/239-346:0.37741):0.07900,O20959_CRYPA/205-321:0.32816):0.04237,(Q35928_SCLSC/294-393:0.42251,(Q02693_PODAN/220-321:0.39449,(((O20960_CRYPA/287-391:0.26043,Q33639_AGRAE/269-392:0.34993):0.10442,(Q02692_PODAN/304-404:0.20257,Q35135_NEUCR/300-401:0.21087):0.22610):0.06750,(YMN3_PODAN/304-405:0.22556,Q02694_PODAN/296-398:0.33355):0.08599):0.05231):0.05840):0.07647):0.06557,((Q02673_PODAN/152-246:0.41223,(Q35136_NEUCR/179-276:0.34324,Q33761_ALLMA/202-303:0.34969):0.11008):0.19537,((((Q02680_PODAN/145-256:0.36581,(Q33795_EMENI/185-291:0.30912,Q02687_PODAN/214-319:0.37536):0.11891):0.12087,Q02679_PODAN/177-283:0.54526):0.15462,(Q02678_PODAN/149-270:0.31382,Q02686_PODAN/199-322:0.30235):0.20311):0.09149,((YMC2_SCHPO/201-296:0.10012,Q33796_EMENI/194-303:0.17412):0.30588,(Q02684_PODAN/188-286:0.30185,Q34833_KLULA/177-290:0.51754):0.12292):0.10076):0.06671):0.12794):0.06655,((Q02696_PODAN/261-371:0.44297,(Q02704_PODAN/265-380:0.35214,O20958_CRYPA/222-334:0.56124):0.25915):0.23152,(Q37060_ACACA/8-112:0.40817,Q39562_9CHLO/8-109:0.37578):0.07493):0.15956):0.06012):0.07066,((DNE1_CHLRE/13-111:0.45163,Q36978_ACACA/17-116:0.39972):0.34012,Q35690_PROWI/127-230:0.71025):0.14876):0.03778,(Q36232_WILSA/59-157:0.44068,((((Q34805_HANWI/208-301:0.39412,(Q02682_PODAN/193-283:0.27525,O21044_DICDI/119-216:0.38041):0.09830):0.17433,(Q34835_KLULA/143-237:0.22079,(Q02676_PODAN/69-165:0.31954,O21045_DICDI/13-109:0.38740):0.15462):0.13212):0.11778,((Q34833_KLULA/60-150:0.34555,(Q02683_PODAN/72-162:0.16095,((Q33761_ALLMA/88-176:0.45527,Q02673_PODAN/44-130:0.37062):0.05512,Q35136_NEUCR/64-156:0.29129):0.19141):0.07611):0.25518,((((Q02689_PODAN/158-245:0.25607,Q02682_PODAN/87-174:0.19720):0.06063,((O20953_PEPGR/55-143:0.23548,O21043_DICDI/26-112:0.49847):0.11919,((SCE2_YEAST/328-415:0.09342,MBI4_YEAST/408-495:0.09231):0.08925,Q34805_HANWI/102-189:0.05998):0.09876):0.02530):0.17847,Q35689_PROWI/10-100:0.41970):0.13506,((Q33795_EMENI/66-167:0.19770,Q02687_PODAN/93-191:0.24077):0.21863,Q33796_EMENI/83-169:0.39035):0.13906):0.08007):0.13671):0.05307,Q35102_METSE/102-200:0.55801):0.02993):0.03299):0.03950,((((DNE1_CHLEU/59-164:0.55466,O20957_CRYPA/30-135:0.55833):0.09500,(Q02695_PODAN/90-184:0.36130,Q02696_PODAN/126-217:0.28543):0.10396):0.06570,(O20958_CRYPA/62-164:0.24028,(Q36465_OPHNO/18-117:0.13744,Q35375_PODAN/13-112:0.23327):0.30134):0.04225):0.04350,Q02704_PODAN/111-210:0.31975):0.12499):0.19162,YMC1_SCHPO/111-210:0.35570):0.07726,YXT1_YEAST/2-97:0.43763):0.05817,Q36758_YEAST/125-227:0.29547):0.41834,Q36230_WILMR/60-204:0.07565,Q36563_WILSA/60-205:0.03848);