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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00945 alignment
(10 sequences with 425 aa)

`Q89867_SIGMA/11-422`	`TKTEFVVRTPEFTSPVEYPFTWFTNNKTKPLFKISVMADCSLETARVAALEFLMGEKVPPSHVIDYLYEFCKTMTQELDTNWESYGQVIGKKGVQLLLLISSTSMISQDT----RKYTPKNPRLLTDEVDIYLVGNLLCSYRYNKTHEK----MQTAYGTKVASILAPFS-THDTQNIRISTFLTNSKSLVDHPNFEIMASAIDMFLERFPSHGMGKLRFGTIGLRYQGCSGLVDLTYLKQILKKSGLADAIKWLFAGCLVSEVFQMMINHQDEIDVKHSYFPYMIGFKISNKSPFSAGSNPSVHTLVHLIGSLLGSPRSINAIMIEYGVISDIVVNAAIVFFAHRSDIGAKVRFGEKGVMDEIHREEDMARQRKRSATAG----GLPATQPTDPRGWLAEYQDRDYKFTQSEVDDLNKVIQGIP`
`Q65474_BEFV/6-416`	`NKKEIKAVKPTDAIPPQYPKEFFINGNGKKPTLRVPQGKLDLPTVRELVFGGLERGELVLSHVIRYLYLVGERITEKLEGDWISFGVNIGRRNQEINVWNFYEVIIEDDQ---TIDGRRANNVDE--NDDVWLTLALLAYYRLGRSANQ---NHRNNLLIKLNAQIKGY---RKDAPNIIDD-VAVHGSWVTNSEFCKIAAGFDMFMNRFKNNKYAHVRFGTVASRYKDAAGLMALGHACDVTGLT-IGEILDWIFVSNVGEDVVKIME-EGNEIDDPYSYMPYMMDMGISNKSPYSSISCPHIYTFLHLVGTLLTSERSKHARMVSEHNLQNIKMNAFVVSYVKSNKAALTKAFLKSEDRDYEKRQEDGSNDDEDEDESGDDDDFGAMPKSSDPMEWFIFLESNHFILPEKVTEFCIRECKKIQ`
`Q65111_9RHAB/6-414`	`NQKAVQPAKPSDTTTPQYPADFFNKNNHQKPTVRVTQRGYKIQELREIISNGIVQDDLNSHHVVRYMELIMEDITDTLDEDWNSFGVKIGRKGDKITPLSLVNVMIEEDE---LIDGKRNNGVNK--KDDKWIMLVITSYYRFAFSQNQ---NHRSNLITKLNLQLRTF---LKDPPTIVDN-MGLFTSLISNINFTKLISALDMFLNRFKNNDWSYLRFGTIASRYKDCSALMSLSHVCDVTGMK-MEEFMDWIFVYSTGEDMIKLMK-EGNEIDNPMSYMPYTMSMGLSTKSPYSSINCPSIYSFIHMLGSFLGSERSRNARMVSENNIVNLKVNAGVVSYVKSHRASMIKAFISNDVKEQWYNNDDNDNENGGDDES--DEELDEMPKGDNPVEWFMYLESRHFELPEEIKNFMNREARKIT`
`NCAP_VSVJO/10-405`	`NDSIIQPKLPANEDPVEYPADYFKNN-TNIVLYVSTK--VALNDLRAYVYQGIKSGNPSILHINAYLYAALKGVEGTLDRDWVSFGRTIGKREENVKIFDLVKVEELKTA---LPDGKSDPDRSA--EDDKWLPIYILGLYRVGRSKVT---DYRKKLLDGLENQCRVA---STRFESLVEDGLDFFDIWENDPNFTKIVAAVDMFFHMFKKHERAPIRYGTIVSRFKDCAALATFGHLSKVSGLS-IEDLTTWVLNREVADELCQMMY-PGQEIDKADSYMPYMIDFGLSQKSPYSSVKNPAFHFWGQLAALLLRSTRAKNARQPDDIEYTSLTCASLLLSFAVGSSADIEQQFYIGEDKYTTEKDDSLKKSDVP-------------PKGRNVVDWLGWYDDNGGKPTPDMLNFARRAVSSLQ`
`NCAP_VSVIG/10-405`	`DNTVIVPKLPANEDPVEYPADYFRKS-KEIPLYINTT--KSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKGLDGV---LPDGVSDASRTR--ADDKWLPLYLLGLYRVGRTQMP---EYRKKLMDGLTNQCKMI---NEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMS-TEDVTTWILNREVADEMVQMML-PGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDSKYTPDDSTGGLTTNAP-------------PQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQ`
`NCAP_CHAV/10-406`	`TGQTVSVCLPANEDPVEFPGAFFTPNAKKPTVYIKKE--TDLSLLRSHVYDGIKDGSVTVSQINSYLYMVLKDIREKPDKNWTSFGVELGKKNEPMGIFDLLNVEDVKGK---ELDKKGQDTRLP--GDDLWLPTLIFGLYRVSRATQV---EYKKTLMTNLYAQCKLR---TKDAEEIVDETAEFFNAWANDSNFTKIVAAVDMYFHHFKKSDHAPIRFGTIVSRFKDCAALSTLSHLQKVTGLP-IEEVFTWVFNKSVQDDLLRMMT-PGQEIDQADSYMPYLIDMGLSTKSPYSSTKNPSFHFWGQLTAFLVKSARAKNALVPVDIAYHELTTAALLFAYAIGRSSELEQRFVLNGKKFTKEKDSREDNDTTP-------------PSERNVVVWLAWWEDIKHEITPDMKAFAKRAVERVG`
`Q83544_9RHAB/11-429`	`NNQVVSLKPEVISDQYEYKYPAILDGKKPGITLGKAP---DLNTAYKSILSGMKAAKLDPDDVCSYLAAAMHLFEGVCPEDWVSYGIVIAKKGEKINPSVIVDIVRTNVEGNWAQAGGTDVIRDPTMAEHASLVGLLLCLYRLSKIVGQNTANYKTNVADRMEQIFETAPFAKVVEHHTLMTTHKMCANWSTIPNFRFLVGTYDMFFARVE-HIYSALRVGTVVTAYEDCSGLVSFTGFIKQINLS-PRDALLYFFHKNFEGEIKRMFE-PGQETAVPHSYFIHFRALGLSGKSPYSSNAVGHTFNLIHFVGCYMGQIRSLNATVIQTCAPLKGAFSQRYLGEEFFGKGTFESTSRDVSTGGIYYTELEEARVEASLADDGTVDSDEEDFFSGETRSPEAVYSRIMMNNGKLKKVHIRRYIAVSS`
`Q82994_9RHAB/11-429`	`HNQVVSLKPEIISDQYEYKYPAITDGKKPGITLGRAP---DLSTAYKSILSGMNAAKLDSDDVCSYLAAAMQLFEGVCPEDWISYGIHIATKGETITPDVLIDVTRTNVEGNWAQAGGTDMTRDPTIAEHASLVGLLLCLYRLSKIVGQNTANYKTNVADRMEQIFETAPFVKVVEHHTLMTVHKMCANWSTIPNFRFLAGTYDMFFARVE-HLYSALRVGTVVTAYEDCSGLVSFTGFIKQINLS-ARDALLYFFHKKFEEEIKRMFE-PGQETAVPHPYFIHFRALGVSGKSPYSSTAVGHHFNLIHFIGCYMGQVKSLNATVIQTCAPHEMSVLGGYLGEEFFGKGTFERRFFRDEKEMQDYADLEGARVEASLADDGTVDSDDEDFFSGETRSPEAVYSRIMMNNGRLKKSHIRRYVSVSS`
`Q66534_9RHAB/11-429`	`HNQLVSVKPEVIVDQYEYKYPAIKDRKKPSITLGKAP---DLNRAYKSILSGINAARLDPDDVCSYLAAAMALFEGICPDDWESYGILIARKGDRITPASLVNIQRTDIEGNWALAGGQDVTKDPTTAEHASLVGLLLCLYRLSKVSGQNTGNYKTNVADRMEQIFATAPFVKIVEHHTLMTTHKMCANWSTIPNFRFLAGTYDMFFSRIE-HLYSAIRVGTVVTAYEDCSGLVSFTGFIRQINLT-AKEAILYFFHKNFEEEIKRMFE-PGQETAVPHSYFIHFRSLGLSGKSPYSSNAVGHVFNLIHFVGSYMGQIRSLNATVIATCAPHEMSVLGGYLGEEFFGKGTFERRFFRDERELAEHEAIESTKTDVALADDGTVNSDDEELYSGGTRTPESVYTRIMVNGGKLKKSHIKRYVSVSS`
`NCAP_RABVA/11-429`	`NNQVVSLKPEIIVDQYEYKYPAIKDLKKPCITLGKAP---DLNKAYKSVLSGMNAAKLDPDDVCSYLAAAMQFFEGTCPEDWTSYGILIARKGDRITPNSLVEIKRTDVEGNWALTGGMELTRDPTVSEHASLVGLLLSLYRLSKISGQNTGNYKTNIADRIEQIFETAPFVKIVEHHTLMTTHKMCANWSTIPNFRFLAGTYDMFFSRIE-HLYSAIRVGTVVTAYEDCSGLVSFTGFIKQINLT-AREAILYFFHKNFEEEIRRMFE-PGQETAVPHSYFIHFRSLGLSGKSPYSSNAVGHVFNLIHFVGCYMGQVRSLNATVIAACAPHEMSVLGGYLGEEFFGKGTFERRFFRDEKELQEYEAAELTKSDVALADDGTVNSDDEDYFSGETRSPEAVYTRIMMNGGRLKRSHIRRYVSVSS`