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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00917 phylogeny
for nucleotide alignment


 
((((((((((((((((((((O16552_CAEEL/148-263,O16553_CAEEL/148-261),(O16558_CAEEL/148-261,O16559_CAEEL/156-269)),(O16557_CAEEL/95-208,O16563_CAEEL/23-136)),O16560_CAEEL/139-252),O16554_CAEEL/22-135),(O76557_CAEEL/289-402,(O17293_CAEEL/110-222,(((O16562_CAEEL/107-218,O17191_CAEEL/289-401),O17190_CAEEL/288-402),(O17288_CAEEL/228-340,O76558_CAEEL/283-397))))),((O17294_CAEEL/11-123,(O17192_CAEEL/11-125,O17303_CAEEL/12-125)),((O17301_CAEEL/574-687,((O76641_CAEEL/14-126,O76642_CAEEL/14-126),(O16556_CAEEL/14-114,O16551_CAEEL/66-178))),O16555_CAEEL/11-123))),(P91298_CAEEL/294-405,(O17176_CAEEL/367-487,P91300_CAEEL/282-399))),((Q20681_CAEEL/86-206,UBP7_HUMAN/74-195),O17175_CAEEL/336-449)),(O44805_CAEEL/16-135,(O76607_CAEEL/140-256,O76610_CAEEL/171-283))),(O17193_CAEEL/10-126,((O76568_CAEEL/14-130,((O16567_CAEEL/25-139,(O16564_CAEEL/13-132,O17297_CAEEL/14-127)),O44815_CAEEL/13-128)),O44817_CAEEL/13-126))),(O16736_CAEEL/13-129,O76611_CAEEL/29-142)),P90846_CAEEL/56-173),O45623_CAEEL/37-168),DG17_DICDI/323-448),(O80808_ARATH/121-240,(P93826_ARATH/73-198,UBP15_YEAST/45-181))),(((((MEPA_HUMAN/437-595,MEPA_RAT/438-598),(MEPB_HUMAN/433-587,MEPB_MOUSE/434-588)),(((TRAF5_HUMAN/409-551,TRAF3_HUMAN/421-562),(TRAF1_MOUSE/265-407,TRAF2_MOUSE/357-498)),(O62248_CAEEL/268-412,TRAF4_HUMAN/313-464))),TRAF6_MOUSE/364-509),(SPOP_HUMAN/37-161,Q94420_CAEEL/47-164))),((O81499_ARATH/77-210,O81496_ARATH/64-169),O81494_ARATH/84-212)),O22286_ARATH/30-158),O04596_ARATH/25-139,O23098_ARATH/16-129);
((((((((((((((((((((O16552_CAEEL/148-263:0.08162,O16553_CAEEL/148-261:0.10376):0.23562,(O16558_CAEEL/148-261:0.09639,O16559_CAEEL/156-269:0.10846):0.03658):0.03383,(O16557_CAEEL/95-208:0.09431,O16563_CAEEL/23-136:0.09353):0.03237):0.05163,O16560_CAEEL/139-252:0.14864):0.05259,O16554_CAEEL/22-135:0.14121):0.13361,(O76557_CAEEL/289-402:0.20610,(O17293_CAEEL/110-222:0.23279,(((O16562_CAEEL/107-218:0.20943,O17191_CAEEL/289-401:0.08781):0.04744,O17190_CAEEL/288-402:0.10729):0.02284,(O17288_CAEEL/228-340:0.15758,O76558_CAEEL/283-397:0.10107):0.02627):0.04143):0.11332):0.07634):0.08365,((O17294_CAEEL/11-123:0.12619,(O17192_CAEEL/11-125:0.11597,O17303_CAEEL/12-125:0.06921):0.05091):0.25110,((O17301_CAEEL/574-687:0.23041,((O76641_CAEEL/14-126:0.11047,O76642_CAEEL/14-126:0.09583):0.03951,(O16556_CAEEL/14-114:0.08912,O16551_CAEEL/66-178:0.14607):0.02955):0.06009):0.03888,O16555_CAEEL/11-123:0.23104):0.07170):0.05481):0.12132,(P91298_CAEEL/294-405:0.27390,(O17176_CAEEL/367-487:0.22368,P91300_CAEEL/282-399:0.23479):0.15467):0.21502):0.07522,((Q20681_CAEEL/86-206:0.43573,UBP7_HUMAN/74-195:0.62039):0.30988,O17175_CAEEL/336-449:0.30742):0.09603):0.11287,(O44805_CAEEL/16-135:0.43337,(O76607_CAEEL/140-256:0.59975,O76610_CAEEL/171-283:0.56252):0.17312):0.19254):0.08670,(O17193_CAEEL/10-126:0.53541,((O76568_CAEEL/14-130:0.24301,((O16567_CAEEL/25-139:0.34482,(O16564_CAEEL/13-132:0.42238,O17297_CAEEL/14-127:0.27666):0.07078):0.06938,O44815_CAEEL/13-128:0.26796):0.05635):0.10590,O44817_CAEEL/13-126:0.38623):0.15342):0.07958):0.07959,(O16736_CAEEL/13-129:0.51008,O76611_CAEEL/29-142:0.58221):0.14165):0.18895,P90846_CAEEL/56-173:0.69338):0.10782,O45623_CAEEL/37-168:0.82338):0.09333,DG17_DICDI/323-448:0.68379):0.14565,(O80808_ARATH/121-240:0.69440,(P93826_ARATH/73-198:0.50013,UBP15_YEAST/45-181:0.63418):0.27752):0.12131):0.15442,(((((MEPA_HUMAN/437-595:0.12945,MEPA_RAT/438-598:0.09162):0.29392,(MEPB_HUMAN/433-587:0.09498,MEPB_MOUSE/434-588:0.10540):0.31866):0.30345,(((TRAF5_HUMAN/409-551:0.22660,TRAF3_HUMAN/421-562:0.21844):0.14380,(TRAF1_MOUSE/265-407:0.18568,TRAF2_MOUSE/357-498:0.22123):0.09199):0.11705,(O62248_CAEEL/268-412:0.64887,TRAF4_HUMAN/313-464:0.34103):0.05980):0.13334):0.25829,TRAF6_MOUSE/364-509:0.54532):0.38829,(SPOP_HUMAN/37-161:0.55465,Q94420_CAEEL/47-164:0.64069):0.29344):0.14117):0.18460,((O81499_ARATH/77-210:0.26048,O81496_ARATH/64-169:0.16780):0.05121,O81494_ARATH/84-212:0.00299):0.52611):0.09811,O22286_ARATH/30-158:0.71490):0.46026,O04596_ARATH/25-139:0.17599,O23098_ARATH/16-129:0.00000);