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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00917 phylogeny
for amino acid alignment


 
((((((YPT9_CAEEL/51-172,((((MEPA_HUMAN/437-595,MEPA_RAT/438-598),(MEPB_HUMAN/433-587,MEPB_MOUSE/434-588)),(TRAF4_HUMAN/313-464,(O62248_CAEEL/268-412,(((TRAF1_MOUSE/265-407,TRAF2_MOUSE/357-498),TRAF3_HUMAN/421-562),TRAF5_HUMAN/409-551)))),TRAF6_MOUSE/364-509)),(((P93826_ARATH/73-198,UBP15_YEAST/45-181),(DG17_DICDI/323-448,(((O45623_CAEEL/37-168,UBP7_HUMAN/74-195),Q20681_CAEEL/86-206),(P90846_CAEEL/56-173,((((((((O17297_CAEEL/14-127,(O16567_CAEEL/25-139,(O44815_CAEEL/13-128,O76568_CAEEL/14-130))),O44817_CAEEL/13-126),O16564_CAEEL/13-132),((O76607_CAEEL/140-256,O76610_CAEEL/171-283),O44805_CAEEL/16-135)),YKV2_CAEEL/14-125),((O17175_CAEEL/336-449,(P91298_CAEEL/294-405,(O17176_CAEEL/367-487,P91300_CAEEL/282-399))),((O17294_CAEEL/11-123,(O17192_CAEEL/11-125,O17303_CAEEL/12-125)),((O76557_CAEEL/289-402,(((O16552_CAEEL/148-263,O16553_CAEEL/148-261),(((O16558_CAEEL/148-261,O16559_CAEEL/156-269),(O16560_CAEEL/139-252,(O16557_CAEEL/95-208,O16563_CAEEL/23-136))),O16554_CAEEL/22-135)),(O17293_CAEEL/110-222,((O17190_CAEEL/288-402,(O17288_CAEEL/228-340,O76558_CAEEL/283-397)),(O16562_CAEEL/107-218,O17191_CAEEL/289-401))))),(O17301_CAEEL/574-687,(O16555_CAEEL/11-123,(O16551_CAEEL/66-178,((O76641_CAEEL/14-126,O76642_CAEEL/14-126),O16556_CAEEL/14-114)))))))),(O17193_CAEEL/10-126,O16736_CAEEL/13-129)),O76611_CAEEL/29-142))))),O80808_ARATH/121-240)),(YLJ8_CAEEL/51-174,(SPOP_HUMAN/37-161,Q94420_CAEEL/47-164))),((O81494_ARATH/84-212,O81496_ARATH/64-169),O81499_ARATH/77-210)),O22286_ARATH/30-158),O04596_ARATH/25-139,O23098_ARATH/16-129);
((((((YPT9_CAEEL/51-172:1.24197,((((MEPA_HUMAN/437-595:0.12850,MEPA_RAT/438-598:0.14938):0.46612,(MEPB_HUMAN/433-587:0.08116,MEPB_MOUSE/434-588:0.13627):0.40196):0.51350,(TRAF4_HUMAN/313-464:0.47675,(O62248_CAEEL/268-412:0.92340,(((TRAF1_MOUSE/265-407:0.25459,TRAF2_MOUSE/357-498:0.19611):0.15989,TRAF3_HUMAN/421-562:0.23436):0.08025,TRAF5_HUMAN/409-551:0.18429):0.14258):0.19116):0.25504):0.40087,TRAF6_MOUSE/364-509:0.72592):0.82767):0.27543,(((P93826_ARATH/73-198:0.84801,UBP15_YEAST/45-181:1.18882):0.32115,(DG17_DICDI/323-448:1.27268,(((O45623_CAEEL/37-168:1.36965,UBP7_HUMAN/74-195:0.47537):0.32662,Q20681_CAEEL/86-206:0.79183):0.35258,(P90846_CAEEL/56-173:1.20745,((((((((O17297_CAEEL/14-127:0.49297,(O16567_CAEEL/25-139:0.54736,(O44815_CAEEL/13-128:0.40390,O76568_CAEEL/14-130:0.54578):0.06814):0.07619):0.08622,O44817_CAEEL/13-126:0.68012):0.09289,O16564_CAEEL/13-132:0.71184):0.06853,((O76607_CAEEL/140-256:1.03032,O76610_CAEEL/171-283:0.97574):0.46192,O44805_CAEEL/16-135:0.77804):0.09537):0.07853,YKV2_CAEEL/14-125:0.69564):0.21095,((O17175_CAEEL/336-449:0.55545,(P91298_CAEEL/294-405:0.47159,(O17176_CAEEL/367-487:0.30872,P91300_CAEEL/282-399:0.29280):0.19137):0.35876):0.14452,((O17294_CAEEL/11-123:0.24829,(O17192_CAEEL/11-125:0.12832,O17303_CAEEL/12-125:0.11040):0.07647):0.39980,((O76557_CAEEL/289-402:0.35807,(((O16552_CAEEL/148-263:0.16697,O16553_CAEEL/148-261:0.19326):0.25794,(((O16558_CAEEL/148-261:0.11119,O16559_CAEEL/156-269:0.17414):0.09850,(O16560_CAEEL/139-252:0.26450,(O16557_CAEEL/95-208:0.14453,O16563_CAEEL/23-136:0.13668):0.04277):0.05449):0.08355,O16554_CAEEL/22-135:0.21253):0.07108):0.12383,(O17293_CAEEL/110-222:0.51445,((O17190_CAEEL/288-402:0.20269,(O17288_CAEEL/228-340:0.29026,O76558_CAEEL/283-397:0.21030):0.04385):0.02325,(O16562_CAEEL/107-218:0.42729,O17191_CAEEL/289-401:0.09952):0.07825):0.08783):0.13138):0.03894):0.19760,(O17301_CAEEL/574-687:0.32669,(O16555_CAEEL/11-123:0.34986,(O16551_CAEEL/66-178:0.17627,((O76641_CAEEL/14-126:0.11169,O76642_CAEEL/14-126:0.17530):0.01284,O16556_CAEEL/14-114:0.15924):0.02352):0.09915):0.04460):0.05858):0.05476):0.11771):0.18679):0.10980,(O17193_CAEEL/10-126:0.80243,O16736_CAEEL/13-129:1.09220):0.12072):0.21100,O76611_CAEEL/29-142:1.41587):0.11828):0.09101):0.35950):0.05834):0.30620,O80808_ARATH/121-240:0.99879):0.22181):0.25146,(YLJ8_CAEEL/51-174:1.13710,(SPOP_HUMAN/37-161:0.43376,Q94420_CAEEL/47-164:1.37898):0.68632):0.17400):0.31980,((O81494_ARATH/84-212:0.07286,O81496_ARATH/64-169:0.25826):0.08443,O81499_ARATH/77-210:0.36209):0.99913):0.19039,O22286_ARATH/30-158:0.81301):1.13042,O04596_ARATH/25-139:0.30523,O23098_ARATH/16-129:0.00000);