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Protein and Associated NucleotideDomains with Inferred Trees
(View raw data for PF00915 - Calici_coat)
Calicivirus coat protein
(Pfam reference: accession no. PF00915)
(Interpro reference: accession no. IPR004005)


sequences alignment phylogeny
amino acids
(Pfam-A seed alignment)
11 sequences @ 314 aa
(ave. pairwise identity: 0.41)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 5.22)
nucleotides
(available for above)
11 sequences @ 942 bp
(ave. pairwise identity: 0.47)
New Hampshire format
(total tree length: 4.37)
amino acids, restricted set
(corresp. to available nt seqs)
11 sequences @ 314 aa
(ave. pairwise identity: 0.41)
New Hampshire format
(total tree length: 5.22)