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Pfam
pandit
PANDIT
P
rotein and
A
ssociated
N
ucleotide
D
omains with
I
nferred
T
rees
(View raw data for PF00906 - Hepatitis_core)
Hepatitis core antigen
(
Pfam
reference: accession no.
PF00906
)
(
Interpro
reference: accession no.
IPR002006
)
sequences
alignment
phylogeny
amino acids
(Pfam-A seed alignment)
6 sequences @ 158 aa
(ave. pairwise identity: 0.50)
(view Jalview alignment from Pfam)
New Hampshire format
(total tree length: 2.95)
nucleotides
(available for above)
4 sequences @ 474 bp
(ave. pairwise identity: 0.58)
New Hampshire format
(total tree length: 99.44)
amino acids, restricted set
(corresp. to available nt seqs)
4 sequences @ 158 aa
(ave. pairwise identity: 0.53)
New Hampshire format
(total tree length: 2.62)