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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00883 alignment
(17 sequences with 333 aa)


AMPL_CAEEL/170-478 VRETARLIDTPANILTTDALVDEAVKVGNATG---SKITVIRGEELLKAGFGGIYHVGKAG..PTPPAFVVLSHEVPG--.---STEHIALVGKGVVYDTGGLQIK.-TKTGMPNMKRDMGGAAGMLEAYSALVKHGFS.QTLHACLCIVENNVSPIANKPDDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDMATLTGAQAWLSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDlFFGDLKS-SIADMKNsNLGKMDG-PPSAVAGLFIGAHIGFGEGLRWLHLDIAAPAEVGDR--.----G-TGYGPALFST
PEPB_ECOLI/110-423 V---RDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGLHTVGRGS..ERSPVLLALDYNPTG--.DKEAPVYACLVGKGITFDSGGYSIK.-QTAFMDSMKSDMGGAATVTGALAFAITRGLN.KRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNTDAEGRLVLADGLIDASA-QKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLASAAQENEPFWRLPLAEF.HRSQLPS-NFAELN-.NTGSAAYPAGASTAAGFLSHFVEN-YQQGWLHIDCSATYRKAPVEQ.-WSAGATGLGVRTIAN
AMPA_MYCLE/200-515 VATARDLVNTPPSHLFPAEFAKCAKTLGESAG---LEVEVLDDKALQKAGYGGVIGVGQGS..SRTPRLVRLIHQGSRLAkNPKNARKVALVGKGITFDTGGISIK.-PAASMHHMTSDMAGAAAVIATITLAAQLKLP.IDVVATVPMAENMPSGTAQRPGDVLTQYGGITVEVLNTDAEGRLILADAIVRACQ-DNPDYLIETSTLTGAQTVALGSRIPGVMG-SDKFRDRVAKTSQQVGENGWPMPLPDE.LKDDLKS-TVADLA-.NVSGQRF-AGMLVAGAFLREFVADG--VDWAHIDIAGPAYNTDSPWgYTPKGATGVPTRTMFA
AMPA_RICPR/182-494 VFFTRDISNEPSNIKTPQVYAERIVEILEP---LGVNIDVIGEHDIKNLGMGALLGVGQGS..QNESKLVVMEYKGG---.-SRDDSTLALVGKGVIFDTGGISLK.-PSSNMHLMRYDMAGSAAVVGTIIALASQKVP.VNVVGVVGLVENMQSGNAQRPGDVVVTMSGQTAEVLNTDAEGRLVLADTVWYVQEKFNPKCVIDVATLTGAITVALGSTYAGCFSNNDELADKLIKAGEAVNEKLWRMPLHDD.YDAMINS-DIADIA-.NIGNVPGAAGSCTAAHFIKRFIKDG--VDWAHLDIAGVANSNNASA.LCPKGAVGYGVRLLEK
AMPA_ECOLI/184-491 IKAAKDLGNMPPNICNAAYLASQARQLADSYS-KNVITRVIGEQQMKELGMHSYLAVGQGS..QNESLMSVIEYKGNA--.-SEDARPIVLVGKGLTFDSGGISIK.-PSEGMDEMKYDMCGAAAVYGVMRMVAELQLP.INVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDE.YQEQLES-NFADMA-.NIGGRPG--GAITAGCFLSRFTRK---YNWAHLDIAGTAWRSGK--.--AKGATGRPVALLAQ
AMPA_HAEIN/178-484 IKAARDIANMPPNICNPAYLAEQAKNLAEN-S-TALSLKVVDEEEMAKLGMNAYLAVSKGS..ENRAYMSVLTFNNAP--.-DKNAKPIVLVGKGLTFDAGGISLK.-PAADMDEMKYDMCGAASVFGTMKTIAQLNLP.LNVIGVLAGCENLPDGNAYRPGDILTTMNGLTVEVLNTDAEGRLVLCDTLTYV-ERFEPELVIDVATLTGACVVALGQHNSGLVSTDNNLANALLQAATETTDKAWRLPLSEE.YQEQLKS-PFADLA-.NIGGRWG--GAITAGAFLSNFTKK---YRWAHLDIAGTAWLQGA--.--NKGATGRPVSLLTQ
AMPA_SYNY3/177-485 VILAREMVAAPANEVTPLTFTEIATELAQTYG---LELEVLGQTECEALGMGAFLGVAKAS..ELPPQFIHLTYRPAN--.---PVKKLAIIGKSLTFDSGGLNIK.GAGSGIETMKMDMGGGGATLGAAKAIAQLKPN.VEIHFICAATENMISGTAMHPGDILTASNGKTIEVNNTDAEGRLTLADALVFAEK-LGVEAIVDLATLTGACIVALGDDIGGLWSPNQELADELKVAADKAGEKFWQMPMESK.YFEGLKS-PIADMK-.NTGPRSG--GSITAALFLQQFIKETP---WAHLDIAGPVWTDKQNG.VHNAGATGYPVRTLVQ
AMPL_ARATH/202-512 VIFGRELINSPANVLTPAVLAEEAAKVASTYSD-VFTANILNEEQCKELKMGSYLAVAAAS..ANPPHFIHLVYKPPNG-.--SVKTKLALVGKGLTFDSGGYNIKtGPGCSIELMKFDMGGSAAVLGAAKAIGEIKPPgVEVHFIVAACENMISGTGMRPGDVITASNGKTIEVNNTDAEGRLTLADALVYACN-QGVDKIVDLATLTGACVIALGTSMAGIYTPSDELAKEVIAASERSGEKLWRMPLEES.YWEMMKS-GVADMV-.NTGGRAG--GSITAALFLKQFVSEKVQ--WMHIDMAGPVWNEKKK-.----SGTGFGVATLVE
AMPL2_LYCES/253-561 VILGRELVNAPANVLTPAVLAEEAKKIASTYSD-VFSANILDVEQCKELKMGSYLRVAAAS..ANPAHFIHLCYKPSSG-.--EIKKKIALVGKGLTFDSGGYNIKtGPGCSIELMKFDMGGAAAVLGAAKALGQIKPAgVEVHFIVAACENMISGTGMRPGDIITASNGKTIEVNNTDAEGRLTLS--VGISCN-QGVEKIVDLATLTGACVVALGPSIAGIFTPSDDLAKEVVAASEVSGEKLWRLPMEDS.YWDSMKS-GVADMV-.NTGGRPG--GAITAALFLKQFVNEKVQ--WMHIDLAGPVWSDKKK-.----NATGFGVSTLVE
AMPL1_LYCES/255-566 VILGRELVNAPANIVTPAVLAEEAKKIASTYSD-VISVNILDAEQCKELKMGAYLAVAAAA.tENPPYFIHLCFKTPTK-.--ERKTKLALVGKGLTFDSGGYNLKvGARSRIELMKNDMGGAAAVLGAAKALGEIRPSrVEVHFIVAACENMISAEGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALIYACN-QGVEKIIDLATLTGAIMVALGPSVAGAFTPNDDLAREVVEAAEASGEKLWRMPMEES.YWESMKS-GVADMI-.NTGPGNG--GAITGALFLKQFVDEKVQ--WLHLDVAGPVWSDEKK-.----NATGYGVSTLVE
AMPA_BACSU/178-487 TNSARTLVNMPGNMLTATDLASYAEELAAKYD---FECEILEKSEMEELGMGGILAVNQGS..TEPPKMIVLKYQGKK--.--EWEDVVGLVGKGITFDTGGYSIK.-TKSGIVGMKSDMGGAAAVLGAMETIGELRPE.QNVLCVIPSTDNMISGGAMKPDDVIVSLSGKTIEILNTDAEGRLVLADGITYAKQ-HGASVLVDVATLTGGVVVALGTETTGAMTNDQSFYQQVADAAQECGEAIWQLPITEK.DKKRVKSSQMADLS-.NSPGREG--HAIMAGTFLGEFAES---TPWVHLDIAGTATANKATCfG-PAGATGVMARTLAT
AMPA_HELPY/174-487 LNIVKDLVNTPPMIGTPVYMAEVAQKVAKENH---LEIHVHDEKFLEEKKMNAFLAVNKASlsVNPPRLIHLVYKPKK--.---AKKKIALVGKGLTYDCGGLSLK.-PADYMVTMKADKGGGSAVIGLLNALAKLGVE.AEVHGIIGATENMIGPAAYKPDDILISKEGKSIEVRNTDAEGRLVLADCLSYAQD-LNPDVIVDFATLTGACVVGLGEFTSAIMGHNEELKNLFETSGLESGELLAKLPFNRH.LKKLIES-KIADVC-.NISSSRY-GGAITAGLFLNEFIRDEFKDKWLHIDIAGPAYVEKEWDvN-SFGASGAGVRACTA
AMPA_MYCSA/148-453 QNFARNLGVTPPNELNSEQLAEIIRKDFKKYHN--LKVKVLERKQIELLGMDLLLSVNKGS..VYEPRVVIIEYKGNP-S.-SQEK--TVLVGKGITFDSGGYSLK.-PPKFMLGMKYDMSGSAIVAAVMKAIAQLKPN.KNVSAIMCITDNRINGDASLPDSVYTSMSGKTVEVNNTDAEGRLVLADRLYYGATKLNATRLIDTATLTGTMLTALGQTYSGIYATSCKIWHQFEDAAKIAHEKVWRMPLHED.FNKTNKESLVADLN-.NYSNNEK-SDCNTAAMFLKEFTNN---VPYIHCDVAGTADKKGMG-.------LGILVSTFVE
AMPA_MYCGE/135-439 VNLARELQDTPSDLLYSEVFVKHFEKAASKLP---VKIKVLKQSDLIKKKMGLLLGVNQGS..EREARLLVISYQANK-N.-SKEK--LAFVGKGITYDSGGMNIK.-TGDYMRGMKYDMSGAAIVCSTVLALAKNKVK.TNVVAVAALTENLPGAKAQRPDDIKIAYNGKSVEIDNTDAEGRLVLADAITYAAKDLAATHIIDVATLTGLMSYILSTTYTGIFSTCDHQWESFKKAACSAGEPVWRLPMHPD.YLKPLQLTKLADLQ-.NSTSARG-AGSSRAACFLAEFREG---VSLIHCDIASTASIENLG-.------QGVLVRTLYE
AMPA_MYCPN/134-437 VNMARQLQDTPSDQLYPEEFVKRFEKAATGLG---VKITVLKQADLIKKKMGLLLGVNKGS..EREARLLVISYNNNK-K.-SSET--LALVGKGITYDSGGMNIK.-TGDYMRGMKYDMSGAAIVCSTVLALAKNKVK.TNVVAVAALTENLPGPHAQRPDDIQTAYNGKTVEIDNTDAEGRLVLADAISYAAKDLKATQIIDVATLTGLMSYILSTTYTGIFSTCDMAWDAFKKAACCAGEPVWRLPMHPD.YLKPLES-KLADLQ-.NSTSVKG-AGSSRAACFLAEFREG---VPLIHCDIASTASIQDLG-.------QGVLVRTLYE
YA55_SCHPO/194-508 QNLARSLMECPANYMTSLQFCHFAQELFQNSS--KVKVFVHDEKWIDEQKMNGLLTVNAGS..DIPPRFLEVQYIGKE-K.-SKDDGWLGLVGKGVTFDSGGISIK.-PSQNMKEMRADMGGAAVMLSSIYALEQLSIP.VNAVFVTPLTENLPSGSAAKPGDVIFMRNGLSVEIDNTDAEGRLILADAVHYVSSQYKTKAVIEASTLTGAMLVALGNVFTGAFVQGEELWKNLETASHDAGDLFWRMPFHEA.YLKQLTSSSNADLC-.NVSRAG--GGCCTAAAFIKCFLAQKD-LSFAHLDIAGVMD-KQLNS.WDCDGMSGRPVRTIIE
AMPL_BOVIN/164-477 QNLARRLMETPANEMTPTKFAEIVEENLKSAS-IKTDVFIRPKSWIEEQEMGSFLSVAKGS..EEPPVFLEIHYKGSP-N.-ASEP-PLVFVGKGITFDSGGISIK.-AAANMDLMRADMGGAATICSAIVSAAKLDLP.INIVGLAPLCENMPSGKANKPGDVVRARNGKTIQVDNTDAEGRLILADALCYAHT-FNPKVIINAATLTGAMDIALGSGATGVFTNSSWLWNKLFEASIETGDRVWRMPLFEH.YTRQVIDCQLADVN-.NIGKYRS-AGACTAAAFLKEFVTHP---KWAHLDIAGVMTNKDEVP.YLRKGMAGRPTRTLIE