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PANDIT Protein and Associated NucleotideDomains with Inferred Trees |
PF00860 alignment |
| YWDJ_BACSU/1-392 | MKLVLGALQWTAFIIAAAIVVPVAVAQS---FHLDHSDSaRLIQSTFFVLGIAAVIQCL-------KGHRLPINESPAGLWWG------VYTIYAGLTG--.-TVFATYGDTLRGLQGALLVSAVCFFLLSVFKVIDRLAKLFTPVVTGVYLLLLVMQLSQPIIKGILGIGYR-QDG------VDGLVFGLALVVIAAAFIMTNS---NIMFFKQYSILLALFGGWVLFAAAG----AAKP----------.---IEMPDRLFQLPSLFPFGTPL----.-FNSGLIITSIFITILLIVNMLASMKVVDIAMKKFSKQPDGKHHERHAGFAASFSHLLSGLTGA-IAPVPISGAAGFIETTKMPSKKPFMLGSILVIVISVIPFFMNTFASLPSPV.GFAVNFVVFSAMGGLAFAEFDSYEKEE.SKRVRSIIGISLLTGVGIMFVPET |
| YBBY_ECOLI/8-396 | RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLP---QSSLlTLTQYAFLATALACFAQAF-------CGHRRAIMEGPGGLWWG-----TILTITLGEASRG.----TPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADP---NFKIQLPPFALSVAVMCLVLAMIIF---LPQRFARYGLLVGTITGWLLWYFCFPSSHSLSG----------.----E--LHWQWF--P--LGSGG----.ALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAG---NTRYRRSFVATGFMTLITVPLAV-IPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPV.SSAVMLVSYLPLLFSALVFSQQITFT-.-ARNIYRLALPLFVGIFLMALPPV |
| YICE_ECOLI/33-428 | PQTLFAACQHLLAMFVAVITPALLICQA--LGLPAQDTQ.HIISMSLFASGVASIIQIKAWGP---VGSGLLSIQGTSFNFVAPLIMGGTALKT-G-----.-G--ADVPTMMAALFGTLMLASCTEMVISRVLH--LARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDN--T--FGAPKNLLLAGVVLALIILLNRQ---RNPYLRVASLVIAMAAGYALAWFMG--MLPESNE---------.----PMTQELIMVPTPLYYGLG-----.-IEWSLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNT-FPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPV.LGGATLVMFGTIAASGVRIVSREPLN-.-RRAILIIALSLAVGLGVSQQPLI |
| YGFO_ECOLI/41-435 | HQALVGAITHLLAIFVPMVTPALIVGAA--LQLSAETTA.YLVSMAMIASGIGTWLQVNRYGI---VGSGLLSIQSVNFSFVTVMIALGSSMKS-D-----.-G--FHEELIMSSLLGVSFVGAFLVVGSSFILP--YLRRVITPTVSGIVVLMIGLSLIKVGIIDFGGGFAAKSSG--T--FGNYEHLGVGLLVLIVVIGFNCC---RSPLLRMGGIAIGLCVGYIASLCLG--MVDFSS----------.----MRNLPLITIPHPFKYGFS-----.-FSFHQFLVVGTIYLLSVLEAVGDITATAMVSRRPIQGEEYQSRLKGGVLADGLVSVIASAVGS-LPLTTFAQNNGVIQMTGVASRYVGRTIAVMLVILGLFPMIGGFFTTIPSAV.LGGAMTLMFSMIAIAGIRIIITNGLK-.-RRETLIVATSLGLGLGVSYDPEI |
| YGFU_ECOLI/28-412 | GKLIILGLQHVLVMYAGAVAVPLMIGDR--LGLSKEAIA.MLISSDLFCCGIVTLLQCIG--IGRFMGIRLPVIMSVTFAAVT-------PMIAIGMNP--.-------DIGLLGIFGATIAAGFITTLLAPLIG--RLMPLFPPLVTGVVITSIGLSIIQVGIDWAAGGK---GNP----QYGNPVYLGISFAVLIFILLITRY---AKGFMSNVAVLLGIVFGFLLSWMMN--EVNLSG----------.----LHDASWFAIVTPMSFGMPI----.-FDPVSILTMTAVLIIVFIESMGMFLALGEIVGRKLS----SHDIIRGLRVDGVGTMIGGTFNS-FPHTSFSQNVGLVSVTRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFV.LGGAGLVMFGMVLATGIRILSRCNYTT.NRYNLYIVAISLGVGMTPTLSHDF |
| PBUX_BACSU/6-386 | GKTLSLGIQHVLAMYAGAIVVPLIVGKA--MGLTVEQLT.YLVSIDIFMCGVATLLQVW---SNRFFGIGLPVVLGCTFTAVS-------PMIAIGS----.-------EYGVSTVYGSIIASGILVILISFFFG--KLVSFFPPVVTGSVVTIIGITLMPVAMNNMAGGE---GSA----DFGDLSNLALAFTVLSIIVLLYRF---TKGFIKSVSILIGILIGTFIAYFMG--KVQFDN----------.----VSDAAVVQMIQPFYFGAPS----.-FHAAPIITMSIVAIVSLVESTGVYFALGDLTNRRLT----EIDLSKGYRAEGLAVLLGGIFNA-FPYTAFSQNVGLVQLTGIKKNAVIVVTGVILMAFGLFPKIAAFTTIIPSAV.LGGAMVAMFGMVIAYGIKMLSRIDFA-.KQENLLIVACSVGLGLGVTVVPDI |
| PUCK_BACSU/8-388 | LQLMMLGLQHMLAMYAGAILVPLIVGAA--IGLNAGQLT.YLIAIDLFMCGAATLLQLW---RNRYFGIGLPVVLGCTFTAVG-------PMISIGS----.-------TYGVPAIYGAIIAAGLIVVLAAGFFG--KLVRFFPPVVTGSVVMIIGISLIPTAMNNLAGGE---GSK----EFGSLDNVLLGFGVTAFILLLFYF---FKGFIRSIAILLGLIAGTAAAYFMG--KVDFSE----------.----VLEASWLHVPSLFYFGPPT----.-FELPAVVTMLLVAIVSLVESTGVYFALADITNRRLS----EKDLEKGYRAEGLAILLGGLFNA-FPYTAFSQNVGIVQLSKMKSVNVIAITGIILVAIGLVPKAAALTTVIPTPV.LGGAMIVMFGMVISYGIKMLSSVDLD-.SQGNLLIIASSVSLGLGATTVPAL |
| PUCJ_BACSU/6-391 | FKVFTLSLQHVLAMYAGAILVPLLVGRA--LNVTTEQLS.YLLAIDLLTCGVATLLQTL---RGTYIGIGLPVMLGSSFVAVT-------PMIAIGS----.-------NYGIHAIYGSIIAAGVFIFLFARFFG--KLTVLFPPVVTGTVVTLIGLSLVPTGVKNMAGGEKINGSAN--PEYGSLENLLLSVGVLVLILVLNRF---LKGFARTLSVLIGIAAGTAAAAIMG--KVSFSS----------.----VTEAPFFQIPKPFYFGAPA----.-FEIGPILTMLIVGIVIIVESTGVFYAIGKICGRPLT----DKDLVKGYRAEGIAILIGGLFNA-FPYNTFAQNAGLLQLTKVKTRNIVVTAGCILVCLGLIPKIAALASAVPAAV.LGGATVVMFGMVIASGVKMLSTADLK-.NQYHLLTIACSIALGIGASTAPGI |
| YCDG_ECOLI/30-404 | AQTAVMGVQHAVAMFGATVLMPILMGLD-----------.--PNLSILMSGIGTLLFFF------ITGGRVPSYLGSSAAFVG------VVIAATGFNG--.QGINPNISIALGGIIACGLVYTVIGLVVMKIGTR-WIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS---------------AFDSWMAVMTVLCIGLVAVF---TRGMIQRLLILVGLIVACLLYGVMTN-VLGLGKAVDFT-----.---LVSHAAWFGLP---HFSTPA----.-FNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMD-----PYMGRAFVGDGLATMLSGSVGG-SGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAV.IGGASIVVFGLIAVAGARIWVQNRVDLsQNGNLIMVAVTLVLGAGDFALTLG |
| URAA_HAEIN/16-385 | LKQSFVGLQMLFVAFGALVLVPLITGLD-----------.--SNTALLTAGVGTLLFQF------CTGKQVPIFLASSFAFIAP---IQYGVQTWG-----.------IATTMGGLAFTGLVYFALSTLVKLRGAE-ALQRFFPPVVVGPVIIIIGMGLAPIAVDMSLGK-----NS----AYAYNDAVLVSMVTLLTTLSVAVF---AKGLMKLIPIMFGITAGYILCLFLG--LINFQP----------.----VIDAPWFSLP---KLTTP-----.EFNLEAILYMLPIAIAPAVEHVGGIMAISSVTGKDFLK---KPGLHRTLLGDGIATAAASLVGG-PPNTTYAEVTGAVMLTRNFNPNIMTWAAVWAIAISFCGKVGAFLSTIPTIV.MGGIMMLVFGSIAVVGMSTLIRGKVDVtEARNLCIISVVMTFGIGNMFVDVG |
| URAA_ECOLI/15-385 | LQTIPLSLQHLFAMFGATVLVPVLFHIN-----------.-P-ATVLLFNGIGTLLYLF------ICKGKIPAYLGSSFAFISP----VLLLLPLG-----.------YEVALGGFIMCGVLFCLVSFIVKKAGTG-WLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLP---AEG----QTPDSKTIIISITTLAVTVLGSVL---FRGFLAIIPILIGVLVGYALSFAMG--IVDTTPI---------.----INAHWFALPTLYTPRFEWF----.---A-ILTILPAA-LVVIAEHVGHLVVTANIVKKDLLR---DPGLHRSMFANGLSTVISGFFGS-TPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPV.MGGVSLLLYGVIGASGIRVLIESKVDYnKAQNLILTSVILIIGVSGAKVNIG |
| PYRP_BACSU/17-395 | FSWVSFSLQHLFAMFGSTILVPKLVGMS-----------.-P-AVALVTSGIGTLAYLL------ITKGQIPAYLGSSFAFISP----IILVKATGG----.------PGAAMVGAFLAGLVYGLIALLIRQLGTG-WLMKILPPVVVGPVIIVIGLGLASTAVNMAMYAD---PNAS--ELVYSLKHFSVAGVTLAITIICAIF---LRGFLSLIPVLIGIIGGYLFALTQG--IVNFQPV---------.----LDAKWFAVPEFIIPFKDYHRQLR.SASQPQWFLSHLSQCQSISATNG---AESKVVGQDFI----KAGLHRSIMGDSVATILASLIGG-PPTTTYGENIGVLAITRVFSVFVIGGAAVIALCFGFIGKISALISSVPSAV.MGGVSFLLFGIIASSGLRMLIDNKIDYeNNRNLIITSVILVIGVGGAFIQVS |
| PYRP_BACCL/15-390 | GQWITLSLQHLFAMFGATILVPYLVGLD-----------.-P-SIALLTSGLGTLAFLL------ITKWQVPAYLGSSFAYIAP----IIAAKTAGG----.------PGAAMIGSFLAGLVYGVVALIIKKAGYR-WVMKLLPPVVVGPVIIVIGLGLAGTAVGMAMNG----PDG-----KYSLLHFSVALVTLAATIVCSVL---ARGMLSLIPVLVGIVVGYLYALAVG--LVDLSKV---------.----AAAKWFEWPDFLIPFADYP--VR.VTWEIVMLMVPVA-IVTLSEHIGHQLVLSKVVGRDLIQ---KPGLHRSILGDGTATMISALLGG-PPKTTYGENIGVLAITRVYSVYVLAGAAVIAIAFGFVGKITALISSIPTPV.MGGVSILLFGIIASSGLRMLIDSRVDFgQTRNLVIASVILVIGIGGAVLKIS |
| Q60850_MOUSE/80-476 | GGLSYPPAQLLASSFFSCGLSTVLQTWMG-----SRLPLiQAPSLEFLIPALVLTNQKLP------LTTKTPGNASLSLPLCS------LTRSCHG-----.---LELWNTSLREVSGAVVVSGLLQGTIGLLGVPGRVFPYCGPLVLAPSLVVAGLSAHKEVAQFCSAHWGLALLLIL-LMVVCSQHLGSCQIPLCSWRPSSTSTHICIPVFRLLSVLAPVACVWFISAFVGTSVIPLQLS--E------.----PSDAPWFWLPHPGEWEWPL----.-LTPRALAAGISMALAASTSSLGCYALCGQLLRLSPPP---PHACSRGLSLEGLGSVLAGLLGSPLGTASSFPNVGTVSLFQTGSRRVAHLVGLFCMGLGLSPRLAQLFTSIPLPV.LGGVLGVTQAVVLSAGFSSFHLADID-.SGRNVFIVGFSIFMALLLPRWLRE |
| Q18771_CAEEL/30-454 | GIALLYGLQQVMVCVSALLTVPLIMADSMCPGSSIAVLRqTLISSTFVSSGISTIIQTL-------FGMRLALLQGTAFAYVPSVQGFMSLPENTCNATESdYVPEEVYYGKLALLQGCLIASSFVPILIGATGLVGMLTKFIGPLTVSPLMLLLAFSQVDLMVTHISKHWVAIVQA---VTLFATILYLAEVKVPVPGIKNGKFHWYRINLFGQYPYLIAICTSWIFCVALT--IFNLTPEGSAARVDKNiSLAVIRESSWLEVPYPGKFGPPQ----.-FNTGLFLLFLLSAMTSVFESVGDYHAAARVSEERPPP---SHAINRGILAEGLGSLISGLLGPGVGMTTHTENIGVIGVTRVASRWTMVMAGVFLIILGLITKIGALLSTIPDPL.VGGVLASSMAMVVGVAVSNLQTVDMT-.LSRNMGIFGFSMMFGLIVPKYFKL |
| O18063_CAEEL/22-377 | SAIFFYGFQQMLVCISALLITPYLVSNLLCAGVETT---.-------------------------------------------------------------.------------AISGSLFAAVLIMPFLGLTGMVGRMAKHIGPITIVPMLILLCIGVIPDIEHKVSLHWISIIEILI-LIAFVVLLEEYEVPIPAFSMEQKKFNTMKIKLFSQFPYLLGIMIAWFACWILT--ISDLEPYGSSARTDRNdSLFVLENTPWIQIQYPLQFGFPR----.-LSAPLVIAFTASMLAAMIESIGSYGICARICQQGSPP---SSSMNRAFVVEGFGSMLAALMGVGTGVTTYSENIAIMQVTKVTSRITMQCAGVILILMGIFSKFAAFLAMIPEAI.IGGVLTAGMSMICGVAFSNLQSVDLR-.LSRNLTIIGLSIILGCTIPAHFEK |
| O18061_CAEEL/19-439 | SAIFFFGLQQMLVCISALLVTPYFVSNLLCAGAETTEVRvQLIAATFISSGIATILQTT-------FGLRLAILHGPSFAFFP------ALHTFGDVYPCNsDTDTTQWKEKLQMISGSLFVAVLIMPFLGITGMVGRIAKHIGPITIVPMLMLLCIGTVQDIEQKVSHHWISIVEILL-LIIFVVLLEEFEVPMPAFSMEKKAFYTAKMKIFSQFPYLLGIMIAWFVCWILT--ITDLEPYGCSARTDRNeSLFVLENTPWIQIQYPLQYGLPK----.-LSAPLIIAFSASMLAATIESIGNYGICARICQQGSPP---SSSMNRAFVVEGFGSMLAALMGVGTGVTTYSENIAIMQVTKVTSRITMQCAGVILILMGIFSKFAAFLAMIPEAI.IGGVLTAGMSMICGVAFSNLQSVDLR-.LSRNLTIIGLSIILGCTIPAHFEK |
| O18057_CAEEL/15-435 | PSIMLFGLQQMMICLSSLLVIPYVVSDMLCAGDQAMEIRvQLISATFVTSGIATILQTT-------FGMRLSILHGPSFAFLP------ALHTFQATFPCDaNTDTSNWQEKMQMISGSCLIAVLIMPILGFTGLVGKISKYIGPVTIVPIMSLLTIGTVPDIESKMALHWISIVEFLT-LILFVVILERYEVPIPIFSLSEKKFKFTRQKIFSQFPYLLGISIVWFICFIMT--ITNAEPRGGEARTDQNaSITVFDQTPWVQMPMPLFFGPPK----.-FNLALVCGFTASCFAAMIESIGDYNLCAKISKQSRPP---PSNTNRAFVVEGIGCILAALWGVGTGVTTYAENIAIMSVTKVTSRITMQMAGVFLILAGVISKFAAFLSMIPEPI.IGGLLAMGVCLINGVSLSNLQTVDMK-.LSRNLTIIGVSIIMGLTVATHFEK |
| YJCD_HAEIN/18-399 | RQEIIAGLTTFLAMVYSVIVVPNMLGAA----G--FPAE.SVFIATCLVAGLGSILIGL------WANAPMAIGCAISLTAFT------AFSLVIG-----.------QKVAIPVALGAVFLMGVVFTLISTTGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSN-QAG---LPVKLGDFTSFPVMMSLIGLALIIG---LEKMKIKGGILWVIIAITIVGLIFDP-NVKFGGE---------.----IFKMPTFGE---NSLFLQLDFMG.ALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQ-IINGGKALTSDSISSLFSGLFGT-APAAVYIESAAGTAAG----GKTGITAIVVGVLFLLMLFFQPLAFLVPGYA.-TAPALMYVGLLMLSNVSKLDFDDFV-.GAMSGLICAVFIVLTANIVTGIML |
| YJCD_ECOLI/26-410 | RQEVVAGLTTFLAMVYSVIVVPGMLGKA----G--FPPA.AVFVATCLVAGLGSIVMGL------WANLPLAIGCAISLTAFT------AFSLVLG-----.------QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDG---LPVALGDFATFPVIMSLVGLAVIIG---LEKLKVPGGILLTIIGISIVGLIFDP-NVHFSG----------.----VFAMPSLSDENGNSLIGSLDIMG.ALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQ-IIDGGKALTTDSMSSVFSGLVGA-APAAVYIESAAGTAAG----GKTGLTAITVGVLFLLILFLSPLSYLVPGYA.-TAPALMYVGLLMLSNVAKIDFADFV-.DAMAGLVTAVFIVLTCNIVTGIMI |
| O34978_BACSU/12-396 | KQEIIAGLTTFFTMVYIVVVNPVILANA----G--VPFD.QVFTATIIASIVGTLWMAL------AANYPIAIAPGMGLNAYL------AFHVVSAS----.-----DGGITYATAFSAVFTAGVLFIILSLTPLRKQLIEAIPNNLKYGITTGIGLFIAFIGLRQAGIVAAD--ES---NLVTLGNLHSPGVILTLVGLLISVV---LMVLNVSGALFIGMAATALIAFFTG--QLHFSKG---------.----FMSLPHL--PEGLMISNPFTAFGdVIHHGLYAVVFSFLLVTIFDTTGTMIGVAEQAG-LMKNNK-LPNVRKALLADSTATTVGAVFGT-SPTTAFIESSAGVAAG----GRTGLTALTVAVMFAASMFFSPLVSALSGIAaITSPALIIVGSLMMGSVSNMNWKEMD-.EAFPAFLVILAMPLTSSISTGIAL |